Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   WDV79_RS09020 Genome accession   NZ_CP147731
Coordinates   1797551..1798432 (+) Length   293 a.a.
NCBI ID   WP_257151376.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SagR266     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1792551..1803432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDV79_RS09010 (WDV79_09010) rpoC 1793249..1796899 (+) 3651 WP_000228729.1 DNA-directed RNA polymerase subunit beta' -
  WDV79_RS09015 (WDV79_09015) - 1797013..1797378 (+) 366 WP_000285373.1 DUF1033 family protein -
  WDV79_RS09020 (WDV79_09020) comYA 1797551..1798432 (+) 882 WP_257151376.1 competence type IV pilus ATPase ComGA Machinery gene
  WDV79_RS09025 (WDV79_09025) comYB 1798429..1799472 (+) 1044 WP_223295889.1 competence type IV pilus assembly protein ComGB Machinery gene
  WDV79_RS09030 (WDV79_09030) comGF 1799469..1799924 (+) 456 WP_000793378.1 competence type IV pilus minor pilin ComGF -
  WDV79_RS09035 (WDV79_09035) comGG 1799902..1800273 (+) 372 WP_000601104.1 competence type IV pilus minor pilin ComGG -
  WDV79_RS09040 (WDV79_09040) comYH 1800388..1801362 (+) 975 WP_001008574.1 N-6 DNA methylase Machinery gene
  WDV79_RS09045 (WDV79_09045) - 1801394..1802587 (+) 1194 WP_000047534.1 acetate kinase -
  WDV79_RS09050 (WDV79_09050) - 1802739..1802945 (+) 207 WP_000798241.1 helix-turn-helix transcriptional regulator -
  WDV79_RS09055 (WDV79_09055) - 1803004..1803141 (+) 138 WP_001865900.1 hypothetical protein -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 33493.62 Da        Isoelectric Point: 7.4269

>NTDB_id=948336 WDV79_RS09020 WP_257151376.1 1797551..1798432(+) (comYA) [Streptococcus agalactiae strain SagR266]
MVQSLAKQVIHQAVEVNAQDIYIIPKGDCYELYMRIDDERRFIDVFEFNRMASLISHFKFVAGMNVGEKRRSQLGSCDYE
LSEGRLVSLRLSSVGDYRGQESLVIRILYSGHQDLKYWFDNIKQMKEVLGIRGLYLFSGPVGSGKTTLMYQLASEVFKNK
QIITIEDPVEIKNDKMLQLQLNEDIGMTYDALIKLSLRHRPDILIIGEIRDQATARAVIRASLTGVMVFSTIHAKSIPGV
YDRLIELGVNYQELENSLKLIAYQRLIGGGSLIDFETGNFKKHSSDKWNRQVE

Nucleotide


Download         Length: 882 bp        

>NTDB_id=948336 WDV79_RS09020 WP_257151376.1 1797551..1798432(+) (comYA) [Streptococcus agalactiae strain SagR266]
ATGGTTCAATCATTAGCAAAGCAAGTCATTCATCAGGCAGTAGAAGTAAATGCTCAAGATATTTATATCATTCCCAAAGG
TGATTGTTATGAACTCTATATGCGTATTGATGATGAAAGGCGGTTTATTGATGTTTTTGAGTTTAATAGGATGGCTAGTC
TTATTAGTCACTTTAAATTTGTGGCAGGCATGAACGTTGGAGAAAAAAGACGAAGTCAATTAGGTTCTTGTGACTATGAA
CTGTCAGAGGGAAGACTGGTTTCATTACGACTATCGAGTGTGGGAGATTATCGTGGTCAAGAATCTTTAGTTATTCGTAT
TTTGTATTCAGGTCATCAGGACTTAAAATATTGGTTTGATAATATAAAGCAAATGAAGGAAGTACTGGGTATAAGAGGGC
TATATCTTTTTTCCGGCCCTGTGGGGAGTGGTAAAACAACTCTCATGTATCAATTAGCTTCAGAAGTATTTAAAAATAAG
CAAATTATCACGATTGAAGATCCGGTAGAAATCAAGAATGACAAGATGTTACAACTCCAATTGAATGAGGATATTGGAAT
GACTTATGATGCTTTAATCAAACTGTCTTTACGGCATCGTCCAGATATTTTAATTATCGGAGAGATTAGAGATCAAGCGA
CGGCCCGTGCTGTTATTCGTGCAAGTTTAACGGGAGTGATGGTTTTTTCTACTATTCATGCTAAAAGTATTCCCGGAGTC
TATGATAGGCTTATAGAATTAGGGGTTAACTATCAAGAGTTAGAAAATAGTCTAAAATTAATAGCATATCAACGTTTAAT
TGGAGGAGGAAGCCTAATTGACTTTGAGACAGGTAATTTTAAAAAACACTCATCAGACAAGTGGAATAGACAAGTGGAAT
AG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.