Detailed information NTG0948019

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IG620_RS13545
• Genome accession: NZ_CP147682
• Coordinates: 2807670..2808530 (+)
• Length: 286 a.a.
• NCBI ID: WP_004281094.1
• Uniprot ID: N9QGW2
• Organism: Acinetobacter lwoffii strain CCTCC M20191004
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2802670..2813530

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IG620_RS13525 (IG620_13525)	secG	2803288..2803617 (-)	330	WP_004281101.1	preprotein translocase subunit SecG	-
IG620_RS13530 (IG620_13530)	tpiA	2803631..2804422 (-)	792	WP_004281100.1	triose-phosphate isomerase	-
IG620_RS13535 (IG620_13535)	pilB	2804700..2806409 (+)	1710	WP_004281098.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IG620_RS13540 (IG620_13540)	pilC	2806441..2807670 (+)	1230	WP_004281096.1	type II secretion system F family protein	Machinery gene
IG620_RS13545 (IG620_13545)	pilD	2807670..2808530 (+)	861	WP_004281094.1	A24 family peptidase	Machinery gene
IG620_RS13550 (IG620_13550)	coaE	2808532..2809131 (+)	600	WP_004281093.1	dephospho-CoA kinase	-
IG620_RS13555 (IG620_13555)	-	2809153..2810079 (-)	927	WP_016806884.1	DMT family transporter	-
IG620_RS13560 (IG620_13560)	rlmB	2810083..2810832 (-)	750	WP_004281091.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
IG620_RS13565 (IG620_13565)	-	2810967..2811290 (-)	324	WP_004281089.1	pyrimidine/purine nucleoside phosphorylase	-
IG620_RS13570 (IG620_13570)	recN	2811733..2813394 (+)	1662	WP_004281087.1	DNA repair protein RecN	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32010.35 Da
• Isoelectric Point: 8.0624

>NTDB_id=948019 IG620_RS13545 WP_004281094.1 2807670..2808530(+) (pilD) [Acinetobacter lwoffii strain CCTCC M20191004]
MHDFLQYFIQNPTALYIAVGLFSLCIGSFLNVVIYRTPKMMEQEWRTDCQMFLHPEQPVIDETKLSLSKPASACPKCHQP
IRWYQNIPVISWLVLRGKCSNCQNPISIRYPLVEILTAVCALLVVAVFGPTLQMLFGLILTYVLIALTFIDFDTQLLPDR
YTLPLAALGLGVNSYALYTLPGAAIWGYIIGFLCLWVVYYAFKIVTGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSL
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGQ

Nucleotide

• Length: 861 bp

>NTDB_id=948019 IG620_RS13545 WP_004281094.1 2807670..2808530(+) (pilD) [Acinetobacter lwoffii strain CCTCC M20191004]
ATGCACGATTTTCTTCAATATTTTATTCAAAACCCAACGGCGTTGTATATCGCAGTTGGGCTTTTTAGTTTATGTATCGG
CAGCTTTCTGAATGTCGTGATTTACCGCACTCCCAAGATGATGGAACAGGAATGGCGTACTGATTGCCAGATGTTCCTGC
ATCCGGAACAGCCGGTGATTGATGAAACTAAGTTAAGTTTAAGCAAACCCGCTTCAGCTTGCCCCAAGTGTCATCAGCCA
ATCCGCTGGTACCAGAATATTCCCGTCATTAGCTGGCTGGTCCTGCGCGGAAAATGTAGCAACTGCCAGAATCCGATCAG
CATCCGTTATCCTTTGGTTGAAATTCTGACGGCAGTTTGTGCACTCCTTGTCGTAGCAGTATTTGGCCCTACCCTACAAA
TGCTGTTTGGCCTGATCCTGACTTATGTGCTGATCGCACTCACTTTTATTGATTTTGACACCCAGTTATTGCCTGACCGT
TATACTTTACCCTTGGCCGCGCTAGGTTTGGGGGTAAATAGTTATGCACTTTATACCTTACCCGGTGCTGCCATCTGGGG
CTATATTATTGGTTTCCTGTGTCTGTGGGTGGTGTATTATGCATTTAAAATCGTTACCGGCAAGGAAGGTATGGGCTATG
GCGATTTTAAATTGCTTGCCGCCCTGGGTGCCTGGATGGGGCCTTTATTACTGCCTTTAATTGTGCTGCTGTCTTCTCTG
GTTGGTGCGATTATCGGGATTATCCTACTGAAAGTCCGCAAGGAAAATCAGCCTTTTGCCTTTGGTCCCTATATCGCGAT
TGCCGGCTGGATTGCTTTTTTGTGGGGCGAGCAGATTATGAAAGTGTATTTAGGTCAATAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

3D structure

• AlphaFold DB: N9QGW2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	80	99.65	0.797
pilD	Acinetobacter baumannii D1279779	79.649	99.65	0.794
pilD	Vibrio cholerae strain A1552	51.237	98.951	0.507
pilD	Vibrio campbellii strain DS40M4	49.826	100	0.5
pilD	Neisseria gonorrhoeae MS11	46.909	96.154	0.451