Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IG620_RS12885 Genome accession   NZ_CP147682
Coordinates   2675548..2676183 (+) Length   211 a.a.
NCBI ID   WP_004732299.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain CCTCC M20191004     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2670548..2681183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IG620_RS12870 (IG620_12870) - 2671390..2672541 (-) 1152 WP_338840044.1 IS4-like element ISAbe18 family transposase -
  IG620_RS12875 (IG620_12875) - 2672667..2673482 (-) 816 WP_004732295.1 NAD-dependent epimerase/dehydratase family protein -
  IG620_RS12880 (IG620_12880) recG 2673516..2675561 (+) 2046 WP_004732297.1 ATP-dependent DNA helicase RecG -
  IG620_RS12885 (IG620_12885) comF 2675548..2676183 (+) 636 WP_004732299.1 phosphoribosyltransferase family protein Machinery gene
  IG620_RS12890 (IG620_12890) - 2676188..2676589 (-) 402 WP_004732301.1 NUDIX domain-containing protein -
  IG620_RS12895 (IG620_12895) - 2676620..2677210 (-) 591 WP_004732303.1 TIGR00730 family Rossman fold protein -
  IG620_RS12900 (IG620_12900) - 2677363..2678376 (+) 1014 WP_004732304.1 CorA family divalent cation transporter -
  IG620_RS12905 (IG620_12905) - 2678624..2679856 (+) 1233 WP_004730312.1 transposase -
  IG620_RS12910 (IG620_12910) - 2679997..2680287 (-) 291 WP_004732307.1 STAS domain-containing protein -
  IG620_RS12915 (IG620_12915) - 2680303..2680935 (-) 633 WP_004732310.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24300.46 Da        Isoelectric Point: 9.4810

>NTDB_id=948013 IG620_RS12885 WP_004732299.1 2675548..2676183(+) (comF) [Acinetobacter lwoffii strain CCTCC M20191004]
MPMFKLLQHGKSWLTRLQPCQLCLTDHQSIHSVCEDCWRQLPWAHQTIQRQEMQLQIACDYAYPMDRLIQLFKYEQTLHL
QNLLAGALLSLDLPKVSAIVPMPISNERLAERGYNQSLVLAKHVAKKLNVPIWQPVRRMKQHSQKGLSRLERIEDIQSQF
QISTISKLRYRRVLIIDDVVTTGSSIRALSQTLEQLGCQKVYAACLAGAQI

Nucleotide


Download         Length: 636 bp        

>NTDB_id=948013 IG620_RS12885 WP_004732299.1 2675548..2676183(+) (comF) [Acinetobacter lwoffii strain CCTCC M20191004]
ATGCCTATGTTTAAATTACTGCAACATGGAAAATCCTGGCTGACCCGCTTACAGCCCTGCCAGCTCTGTCTGACCGATCA
TCAGTCCATTCATTCAGTCTGTGAAGATTGCTGGCGACAATTACCCTGGGCACATCAAACCATTCAACGGCAGGAAATGC
AGTTACAGATTGCCTGCGACTATGCCTATCCGATGGACCGGCTGATTCAACTGTTTAAATATGAACAGACACTGCATTTG
CAAAATTTACTGGCAGGTGCGCTGTTAAGTTTAGACCTGCCTAAAGTCAGTGCAATTGTACCGATGCCGATCTCGAATGA
GCGTCTGGCAGAGCGCGGGTATAATCAATCTCTGGTGCTGGCAAAACATGTGGCGAAAAAGCTGAATGTACCCATCTGGC
AACCTGTTCGACGAATGAAACAACACTCGCAAAAGGGCCTAAGCCGGCTGGAGCGGATTGAAGACATCCAATCACAATTC
CAGATCAGTACCATTTCCAAGCTGCGTTACCGTCGGGTGCTGATTATTGATGATGTGGTGACGACCGGCAGCTCGATTCG
AGCACTGAGCCAAACACTTGAACAACTGGGCTGTCAAAAAGTTTATGCAGCCTGTCTGGCAGGTGCTCAAATCTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

58.937

98.104

0.578
  comF Acinetobacter baumannii D1279779

58.454

98.104

0.573