Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   IG620_RS11380 Genome accession   NZ_CP147682
Coordinates   2377240..2381691 (-) Length   1483 a.a.
NCBI ID   WP_338839844.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain CCTCC M20191004     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 2372240..2386691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IG620_RS11350 (IG620_11350) elsL 2373214..2373747 (-) 534 WP_004731981.1 cell wall-recycling L,D-carboxypeptidase ElsL -
  IG620_RS11355 (IG620_11355) - 2373744..2374226 (-) 483 WP_338839840.1 YbaN family protein -
  IG620_RS11360 (IG620_11360) - 2374314..2375189 (+) 876 WP_180037068.1 DUF1853 family protein -
  IG620_RS11365 (IG620_11365) - 2375302..2375454 (+) 153 WP_004280704.1 entericidin A/B family lipoprotein -
  IG620_RS11370 (IG620_11370) dapE 2375576..2376712 (+) 1137 WP_180037067.1 succinyl-diaminopimelate desuccinylase -
  IG620_RS11375 (IG620_11375) - 2376778..2377236 (-) 459 WP_044111490.1 hypothetical protein -
  IG620_RS11380 (IG620_11380) chpA 2377240..2381691 (-) 4452 WP_338839844.1 Hpt domain-containing protein Regulator
  IG620_RS11385 (IG620_11385) - 2381859..2383931 (-) 2073 WP_338839846.1 methyl-accepting chemotaxis protein -
  IG620_RS11390 (IG620_11390) - 2383978..2384514 (-) 537 WP_004280709.1 chemotaxis protein CheW -
  IG620_RS11395 (IG620_11395) - 2384520..2384888 (-) 369 WP_004280710.1 response regulator -
  IG620_RS11400 (IG620_11400) pilG 2384914..2385297 (-) 384 WP_004280711.1 twitching motility response regulator PilG Regulator
  IG620_RS11405 (IG620_11405) - 2385585..2386232 (+) 648 WP_338839850.1 hypothetical protein -

Sequence


Protein


Download         Length: 1483 a.a.        Molecular weight: 165804.77 Da        Isoelectric Point: 4.3169

>NTDB_id=948010 IG620_RS11380 WP_338839844.1 2377240..2381691(-) (chpA) [Acinetobacter lwoffii strain CCTCC M20191004]
MKEILKNLVETTTLPEDSYLDQDAEILEIFVEEIEEIFVELNALFPEWLSNPDHQENLKTIRRHFHTLKGSGRMVGAKSA
GEMAWAVEDTLNRVLSGSIQLTPTVQKFAQAVLNVYQYALYPKFKHVQQLDLDLRPMVLLGQQLQQQISPEPALEELLAL
ADHLTAEGQMTGLELADNEPSEVELTIAPVEVPVRSDIEETVAIFIEEAEEHLDTIATFLRTEDEKSQDYNALIRAIHTL
RGSSSMAQIDQIFEASSKVEHLFKTLLQDEIVSTSKETALLIQYAEFVSDYLHLLRQGNTAKLDAVYATFERVWNDYGFA
VTETNSIQTQGLVSKLVELDIDLLLDAEFEFDKRAQVDYPEYIQALSQQAAELLAHTESRAAQGIHEFTADLKSAYDALL
EKPVLLNSDYAYELFAQAHQEFIHLFDTLAAGQRVILNDEIQKILSELSAFVQQDLEIFAEDNTNQNVELSSEATQVAET
VATGSVDFAGLSQRIAADRQQQQSAETNRNFDEELLSIFLEEADELLAGIDEDLNTWSKKQDDTTSLNNLMRHLHTLKGG
ANMIAASHIGLIAHELESIYERVIRQQIAVTPALIQIIRLVQDNISDRIQSIREDGIDYPAPEAIAILQNIQVLVSGQAV
AAVESANTVVEVAEVQATSISEPQLEELATTEQPATDLAEAEELLEILESPEATEDTPVERSEEDELKSIVEESFLEESE
EILANAEKLLSQWFDQRSDRSLLLQLQRAAHSIKGGARMVDVEEVASIAYELETTFEQFAVYQFNSNAYDGLLQKTLVWL
RQAIFQRDYNGFEPLHSSLKKIAYVDVTAQLPERLAKTDNLVVSTDFGFVEGDGTEPPQMMGEWANSGTSDSNNEMIRIS
ADLVEKMIDLSGENSINRSRIEMDLGQLGNTLNEMELAIKRLADQLRRMEGELESQIIAKHGSENSRYADFDPLEMDQYS
SLNQLSKSLAESASDLVDFKSTLADKVRETEGLLLQQSRIQAEIQESLMRTRLVPFDRMLPRLQRIVRQTSTTLNRPAEL
IVQNTEGELDRNILERLVTPFEHMLRNAIDHGLEDTADRIALNKPEVGSIVLNISRQGTDVIVSFSDDGKGIDAEKIREK
ALSLDLIKADQVIDQEEILQFIFHPGFSTAKAVTQISGRGVGLDVVQSEIKSLGGHVSVSSQLGQGTVFTIRVPTTVAVS
DALMVKVGDQQYAISLAQIDRIVRIAPTTLESYFNSKDDYFKIDGANYKLRYLSEFVGNQPIPRLNNVGHSLPVLLIKGN
SGQTIALLVDQLVGSRAQIVVKPIGQQFANVGVVAGATILGDGQVCLILDGQNVARQIQATQRVKQLNDQRDGSRNANAR
RLVMIVDDSVTVRKVTSRLLERQGYDIVTAKDGVDAIEQLENVRPDLMLLDIEMPRMDGFEVTNLVRHHDIHRDLPIIMI
TSRTGEKHRERAFSLGVTHYMGKPFQEAELLANIQQLIAEKQR

Nucleotide


Download         Length: 4452 bp        

>NTDB_id=948010 IG620_RS11380 WP_338839844.1 2377240..2381691(-) (chpA) [Acinetobacter lwoffii strain CCTCC M20191004]
ATGAAAGAAATATTAAAAAATTTAGTTGAAACGACAACGCTTCCTGAAGATAGTTATCTTGACCAAGATGCAGAAATTCT
TGAAATTTTTGTTGAGGAAATCGAAGAGATCTTCGTTGAGTTGAATGCTTTATTTCCAGAATGGTTGAGCAATCCAGATC
ATCAAGAAAATCTGAAGACCATTCGCCGCCATTTTCACACCCTGAAAGGTTCAGGCCGCATGGTCGGGGCAAAATCGGCA
GGGGAAATGGCCTGGGCGGTTGAAGATACCTTAAACCGGGTTTTGTCCGGTTCGATTCAGCTAACACCGACGGTACAGAA
ATTTGCCCAAGCGGTACTGAATGTCTATCAATATGCTTTATATCCAAAATTCAAACATGTACAGCAATTGGATCTCGATC
TGCGTCCAATGGTGCTGTTGGGACAACAATTACAACAACAAATTTCGCCTGAACCTGCATTGGAAGAATTACTGGCATTG
GCAGATCATTTGACCGCTGAAGGTCAGATGACAGGTCTTGAGCTTGCAGACAATGAGCCAAGTGAAGTTGAGCTAACAAT
AGCGCCAGTAGAAGTACCGGTTCGCAGTGATATCGAAGAAACTGTGGCGATCTTTATTGAAGAAGCAGAAGAGCATCTGG
ATACGATTGCTACCTTCCTTCGCACTGAAGATGAAAAATCACAAGATTATAATGCGCTGATTCGTGCGATTCATACTTTG
CGCGGCAGTTCATCCATGGCGCAGATTGACCAGATTTTTGAGGCCAGCTCTAAAGTGGAGCATCTGTTCAAAACCTTGCT
ACAAGATGAAATTGTCTCAACCTCAAAAGAAACCGCTTTACTGATTCAGTATGCTGAGTTTGTCAGTGACTATCTGCATT
TGCTACGTCAGGGCAATACTGCAAAACTGGATGCGGTATATGCCACCTTTGAGCGTGTCTGGAATGATTATGGCTTTGCA
GTTACTGAAACCAATAGCATTCAGACGCAAGGTTTGGTGTCTAAACTGGTTGAGCTGGATATTGATCTGTTATTGGATGC
CGAGTTTGAATTTGATAAACGCGCCCAAGTCGATTATCCGGAATATATTCAGGCACTCAGCCAGCAGGCTGCGGAATTGC
TGGCACATACAGAAAGCCGGGCAGCGCAGGGAATTCATGAATTCACTGCCGATCTGAAATCGGCTTATGATGCGCTGCTT
GAAAAGCCAGTGCTGCTAAACAGCGATTATGCTTATGAACTGTTCGCACAGGCGCATCAGGAATTTATTCATTTATTTGA
TACCTTGGCCGCAGGACAGCGCGTCATTCTGAATGATGAAATTCAAAAAATACTCAGTGAACTGTCTGCATTTGTGCAGC
AGGATCTGGAAATATTTGCTGAAGATAATACCAATCAGAATGTTGAGCTAAGCTCAGAGGCCACACAGGTGGCTGAAACT
GTCGCGACTGGCAGTGTCGATTTTGCTGGCTTGAGCCAACGCATCGCTGCGGATCGTCAGCAGCAGCAAAGTGCTGAAAC
CAACCGTAATTTTGATGAAGAATTACTAAGTATCTTCCTGGAAGAAGCGGATGAATTGCTGGCAGGCATTGATGAAGATC
TGAATACCTGGAGCAAAAAACAGGACGATACAACCTCGCTGAATAATCTGATGCGTCATTTGCATACCTTAAAAGGTGGT
GCAAACATGATCGCAGCATCGCATATCGGTTTGATTGCGCATGAACTGGAAAGTATTTATGAGCGGGTGATCCGTCAGCA
AATTGCCGTGACACCTGCTTTAATCCAGATTATTCGTCTGGTTCAGGACAACATTTCCGATCGTATTCAATCTATTCGGG
AAGACGGCATTGATTATCCTGCACCAGAAGCGATTGCGATTCTGCAAAATATTCAGGTGCTGGTGTCTGGACAAGCTGTT
GCTGCTGTGGAGAGCGCGAATACTGTAGTTGAAGTTGCAGAGGTCCAAGCGACATCAATTTCTGAGCCGCAACTTGAAGA
GTTAGCAACGACTGAACAGCCTGCAACTGATTTGGCAGAAGCTGAAGAATTACTGGAAATCTTGGAATCTCCTGAGGCTA
CTGAAGACACACCAGTAGAACGTTCTGAAGAAGACGAACTGAAATCCATTGTTGAAGAATCTTTCCTCGAAGAATCCGAA
GAGATTCTGGCGAATGCCGAGAAGCTCCTCAGTCAATGGTTTGACCAGCGTAGTGACCGTAGTTTATTGCTGCAATTACA
GCGTGCTGCCCACAGTATCAAGGGTGGCGCACGTATGGTAGATGTTGAAGAAGTGGCCAGTATTGCCTATGAGCTGGAAA
CGACTTTCGAACAGTTTGCGGTCTATCAATTTAACTCAAATGCCTATGATGGCTTACTGCAGAAAACGCTGGTCTGGTTA
AGACAGGCGATTTTCCAGCGTGACTATAACGGTTTTGAGCCGCTGCACAGCAGTCTGAAAAAGATTGCTTATGTGGACGT
TACTGCGCAATTGCCTGAGCGTCTGGCGAAAACAGATAATCTGGTGGTCAGTACCGACTTCGGCTTTGTTGAAGGTGATG
GTACTGAGCCGCCACAGATGATGGGTGAGTGGGCGAATAGCGGCACCAGCGATAGTAATAACGAGATGATCCGTATCTCT
GCTGATCTGGTCGAGAAGATGATTGACCTGTCCGGTGAGAACTCGATTAACCGTTCGCGTATCGAGATGGACTTGGGCCA
GCTGGGCAATACCTTGAACGAGATGGAATTGGCGATCAAACGTCTTGCTGATCAGTTACGTCGAATGGAAGGCGAGCTGG
AATCACAGATTATTGCCAAACATGGTTCAGAGAACTCGCGCTATGCCGACTTTGACCCGCTGGAAATGGACCAATATTCG
TCGCTCAACCAGCTGTCCAAGTCACTTGCAGAATCAGCATCAGATTTGGTCGACTTCAAGAGTACACTGGCCGACAAGGT
TCGCGAAACTGAAGGACTGTTATTGCAACAATCCCGTATTCAGGCCGAGATTCAGGAAAGCCTGATGCGTACCCGTCTGG
TTCCATTTGATCGGATGTTGCCGCGTTTACAGCGTATCGTGCGTCAAACTTCGACCACCTTGAACCGTCCTGCAGAACTG
ATCGTACAGAATACCGAAGGTGAACTGGATCGTAACATTCTCGAGCGTCTGGTCACCCCATTTGAGCATATGCTGCGTAA
CGCGATTGACCATGGTCTGGAAGATACTGCAGATCGTATCGCACTGAACAAGCCGGAAGTCGGTTCTATTGTCTTGAACA
TCAGCCGTCAGGGAACCGATGTAATCGTGTCCTTTAGTGATGATGGTAAGGGGATCGATGCGGAGAAGATTCGTGAAAAA
GCGCTGAGTCTGGATCTAATCAAAGCGGATCAAGTCATTGATCAGGAAGAAATCCTGCAATTTATCTTCCACCCTGGTTT
CAGTACCGCGAAAGCAGTGACCCAGATTTCTGGTCGTGGTGTTGGTCTGGATGTGGTGCAAAGCGAGATCAAATCACTGG
GCGGCCATGTTTCGGTGAGTTCACAACTGGGTCAAGGCACGGTCTTTACGATCCGAGTACCGACGACCGTAGCGGTCAGC
GATGCCTTGATGGTGAAAGTGGGCGATCAGCAATATGCGATTTCTCTGGCGCAGATTGACCGAATCGTGCGTATTGCACC
GACTACATTGGAAAGCTATTTCAACAGTAAAGATGACTATTTCAAGATCGACGGCGCAAACTATAAGCTGCGTTATCTGT
CTGAGTTTGTTGGCAACCAGCCGATTCCACGTCTGAATAATGTTGGGCATTCATTGCCGGTGCTGTTGATTAAAGGTAAT
AGTGGTCAAACCATTGCCTTGCTGGTCGATCAGCTGGTCGGTTCACGGGCGCAAATTGTAGTGAAACCGATTGGACAGCA
GTTTGCCAATGTCGGAGTGGTAGCTGGTGCTACGATTCTGGGTGATGGTCAGGTCTGTCTGATTCTCGATGGACAGAATG
TTGCCCGCCAGATTCAGGCGACACAGCGTGTCAAACAGCTGAATGATCAGCGTGATGGTTCGCGTAATGCAAATGCACGT
CGTCTGGTGATGATTGTCGATGACTCGGTGACTGTACGTAAAGTGACGTCGCGTCTACTTGAACGTCAAGGCTATGATAT
TGTCACTGCCAAAGATGGTGTGGATGCGATCGAGCAGCTTGAAAACGTCAGACCGGATCTGATGTTGCTGGATATCGAAA
TGCCGCGCATGGACGGTTTCGAAGTGACCAATCTGGTTCGTCACCATGATATTCACCGTGACTTGCCGATTATCATGATT
ACCTCACGTACCGGTGAGAAGCATCGTGAACGTGCATTCAGCTTGGGCGTAACGCACTATATGGGTAAACCGTTCCAGGA
AGCGGAACTGTTGGCCAATATCCAGCAACTGATTGCTGAAAAACAGAGGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

61.62

100

0.626