Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   IG620_RS09130 Genome accession   NZ_CP147682
Coordinates   1919963..1920322 (-) Length   119 a.a.
NCBI ID   WP_004278871.1    Uniprot ID   A0AAW8ATZ3
Organism   Acinetobacter lwoffii strain CCTCC M20191004     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1914963..1925322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IG620_RS09100 (IG620_09100) tadA 1915198..1915713 (-) 516 WP_004278860.1 tRNA adenosine(34) deaminase TadA -
  IG620_RS09105 (IG620_09105) - 1915720..1916841 (-) 1122 WP_004278862.1 enoyl-CoA hydratase/isomerase family protein -
  IG620_RS09110 (IG620_09110) ung 1916838..1917551 (-) 714 WP_004731474.1 uracil-DNA glycosylase -
  IG620_RS09115 (IG620_09115) - 1917598..1918194 (-) 597 WP_004278864.1 6-carboxytetrahydropterin synthase -
  IG620_RS09120 (IG620_09120) gspK 1918347..1919318 (-) 972 WP_017397825.1 type II secretion system minor pseudopilin GspK -
  IG620_RS09125 (IG620_09125) xcpW 1919325..1919966 (-) 642 WP_004278869.1 type II secretion system minor pseudopilin GspJ Machinery gene
  IG620_RS09130 (IG620_09130) xcpV 1919963..1920322 (-) 360 WP_004278871.1 type II secretion system protein GspI Machinery gene
  IG620_RS09135 (IG620_09135) - 1920522..1921073 (-) 552 WP_004278872.1 type II secretion system protein -
  IG620_RS09140 (IG620_09140) - 1921083..1921697 (-) 615 WP_004278873.1 TetR/AcrR family transcriptional regulator -
  IG620_RS09145 (IG620_09145) - 1921739..1922512 (-) 774 WP_004278875.1 TatD family hydrolase -
  IG620_RS09150 (IG620_09150) - 1922540..1922881 (-) 342 WP_004278877.1 PilZ domain-containing protein -
  IG620_RS09155 (IG620_09155) - 1922897..1923877 (-) 981 WP_004731481.1 DNA polymerase III subunit delta' C-terminal domain-containing protein -
  IG620_RS09160 (IG620_09160) kdsB 1923892..1924653 (-) 762 WP_004278879.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 13293.11 Da        Isoelectric Point: 4.7344

>NTDB_id=948008 IG620_RS09130 WP_004278871.1 1919963..1920322(-) (xcpV) [Acinetobacter lwoffii strain CCTCC M20191004]
MEVMVALAIFATAAMTLTKVAIQYTQSTSNAILRTKAQFVALNEVAQMEINQEWMEGTASKQLTQQGETWQIDKRSEPTV
SPNVQRIELQVSLVNQDSGQVESGITSLMFFNHRMNNTP

Nucleotide


Download         Length: 360 bp        

>NTDB_id=948008 IG620_RS09130 WP_004278871.1 1919963..1920322(-) (xcpV) [Acinetobacter lwoffii strain CCTCC M20191004]
TTGGAAGTCATGGTGGCCTTGGCAATTTTTGCGACCGCAGCCATGACCCTGACCAAAGTCGCGATTCAATATACCCAGTC
GACCTCGAATGCCATTCTACGTACCAAAGCACAGTTTGTTGCCTTAAATGAAGTGGCACAAATGGAAATTAATCAGGAAT
GGATGGAAGGGACGGCTTCCAAACAGCTGACCCAGCAAGGTGAAACCTGGCAGATTGACAAGCGCAGCGAACCGACGGTC
AGTCCGAATGTACAACGGATCGAGCTGCAGGTGAGTCTGGTTAATCAGGACAGTGGTCAGGTGGAATCTGGTATCACCAG
CCTGATGTTCTTTAATCATCGTATGAACAATACTCCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(34-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

73.451

94.958

0.697