Detailed information NTG0948007

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: IG620_RS09125
• Genome accession: NZ_CP147682
• Coordinates: 1919325..1919966 (-)
• Length: 213 a.a.
• NCBI ID: WP_004278869.1
• Uniprot ID: A0A6N1KTR0
• Organism: Acinetobacter lwoffii strain CCTCC M20191004
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1914325..1924966

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IG620_RS09095 (IG620_09095)	-	1914706..1915137 (-)	432	WP_004278856.1	SRPBCC family protein	-
IG620_RS09100 (IG620_09100)	tadA	1915198..1915713 (-)	516	WP_004278860.1	tRNA adenosine(34) deaminase TadA	-
IG620_RS09105 (IG620_09105)	-	1915720..1916841 (-)	1122	WP_004278862.1	enoyl-CoA hydratase/isomerase family protein	-
IG620_RS09110 (IG620_09110)	ung	1916838..1917551 (-)	714	WP_004731474.1	uracil-DNA glycosylase	-
IG620_RS09115 (IG620_09115)	-	1917598..1918194 (-)	597	WP_004278864.1	6-carboxytetrahydropterin synthase	-
IG620_RS09120 (IG620_09120)	gspK	1918347..1919318 (-)	972	WP_017397825.1	type II secretion system minor pseudopilin GspK	-
IG620_RS09125 (IG620_09125)	xcpW	1919325..1919966 (-)	642	WP_004278869.1	type II secretion system minor pseudopilin GspJ	Machinery gene
IG620_RS09130 (IG620_09130)	xcpV	1919963..1920322 (-)	360	WP_004278871.1	type II secretion system protein GspI	Machinery gene
IG620_RS09135 (IG620_09135)	-	1920522..1921073 (-)	552	WP_004278872.1	type II secretion system protein	-
IG620_RS09140 (IG620_09140)	-	1921083..1921697 (-)	615	WP_004278873.1	TetR/AcrR family transcriptional regulator	-
IG620_RS09145 (IG620_09145)	-	1921739..1922512 (-)	774	WP_004278875.1	TatD family hydrolase	-
IG620_RS09150 (IG620_09150)	-	1922540..1922881 (-)	342	WP_004278877.1	PilZ domain-containing protein	-
IG620_RS09155 (IG620_09155)	-	1922897..1923877 (-)	981	WP_004731481.1	DNA polymerase III subunit delta' C-terminal domain-containing protein	-
IG620_RS09160 (IG620_09160)	kdsB	1923892..1924653 (-)	762	WP_004278879.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 213 a.a.
• Molecular weight: 24303.50 Da
• Isoelectric Point: 4.5453

>NTDB_id=948007 IG620_RS09125 WP_004278869.1 1919325..1919966(-) (xcpW) [Acinetobacter lwoffii strain CCTCC M20191004]
MKPKGFTLVELMVAIAIFAVLSALGWKVFDYIVKTKDQNVIHEQRLGQLQQTYQQILRDTVQAVPLTANINGDIQPALVL
QNGRFNFSKTGVTDPLEEGISPDERIEYQYRADEQKLYRLKYRNLNQTGQDQPESSVLLSEVEQFQIVVLNPNELTQWPD
ASTDLNQLEQKQRLPKGVKINLTVNGVSYEWMFSLLNTDFLLDTQNTGQPSSE

Nucleotide

• Length: 642 bp

>NTDB_id=948007 IG620_RS09125 WP_004278869.1 1919325..1919966(-) (xcpW) [Acinetobacter lwoffii strain CCTCC M20191004]
ATGAAGCCTAAAGGATTTACCCTGGTTGAATTAATGGTCGCAATTGCGATCTTTGCGGTGCTGTCTGCTTTGGGCTGGAA
AGTTTTTGATTATATTGTCAAAACCAAAGATCAGAATGTGATTCATGAACAGCGTTTAGGTCAGTTACAGCAAACCTATC
AGCAGATTCTGCGAGATACCGTACAGGCAGTACCCTTAACGGCCAATATCAATGGCGATATTCAGCCGGCTCTAGTGCTA
CAGAACGGACGCTTTAATTTCAGTAAAACTGGAGTGACTGACCCTTTGGAAGAGGGGATTTCCCCAGATGAGCGCATTGA
ATATCAGTATCGAGCTGATGAGCAGAAACTTTATCGCTTGAAATACCGGAACCTGAATCAGACAGGTCAAGATCAGCCCG
AATCCAGTGTTTTATTGTCGGAAGTGGAACAATTCCAGATCGTCGTACTCAATCCGAATGAGCTCACGCAATGGCCAGAT
GCTTCTACTGATCTGAATCAGTTAGAGCAGAAGCAAAGGTTGCCTAAAGGGGTTAAAATCAATTTAACCGTGAATGGCGT
CAGTTATGAATGGATGTTTAGTTTATTAAATACGGACTTTTTGCTTGATACTCAGAACACCGGTCAACCCAGCTCAGAAT
AA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (4-24)

• Type II secretion system (T2SS), protein J (T2SSJ) (58-187)

3D structure

• AlphaFold DB: A0A6N1KTR0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	58.209	94.366	0.549