Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   V7S31_RS03130 Genome accession   NZ_CP147655
Coordinates   609839..610276 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain M1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 604839..615276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V7S31_RS03105 - 605859..606995 (+) 1137 WP_007409359.1 zinc-dependent alcohol dehydrogenase -
  V7S31_RS03110 - 607010..607444 (+) 435 WP_007409358.1 RDD family protein -
  V7S31_RS03115 - 607516..607839 (+) 324 WP_007409357.1 YckD family protein -
  V7S31_RS03120 - 607943..609379 (+) 1437 WP_076425807.1 family 1 glycosylhydrolase -
  V7S31_RS03125 nin/comJ 609420..609818 (-) 399 WP_014416873.1 competence protein ComJ Regulator
  V7S31_RS03130 nucA/comI 609839..610276 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  V7S31_RS03135 hxlB 610634..611191 (-) 558 WP_015239129.1 6-phospho-3-hexuloisomerase -
  V7S31_RS03140 hxlA 611188..611823 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  V7S31_RS03145 - 612055..612417 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=947836 V7S31_RS03130 WP_003156588.1 609839..610276(-) (nucA/comI) [Bacillus velezensis strain M1]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=947836 V7S31_RS03130 WP_003156588.1 609839..610276(-) (nucA/comI) [Bacillus velezensis strain M1]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACAAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641