Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   V7S31_RS03125 Genome accession   NZ_CP147655
Coordinates   609420..609818 (-) Length   132 a.a.
NCBI ID   WP_014416873.1    Uniprot ID   I2C179
Organism   Bacillus velezensis strain M1     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 604420..614818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V7S31_RS03100 - 604592..605794 (+) 1203 WP_039062576.1 GTP-binding protein -
  V7S31_RS03105 - 605859..606995 (+) 1137 WP_007409359.1 zinc-dependent alcohol dehydrogenase -
  V7S31_RS03110 - 607010..607444 (+) 435 WP_007409358.1 RDD family protein -
  V7S31_RS03115 - 607516..607839 (+) 324 WP_007409357.1 YckD family protein -
  V7S31_RS03120 - 607943..609379 (+) 1437 WP_076425807.1 family 1 glycosylhydrolase -
  V7S31_RS03125 nin/comJ 609420..609818 (-) 399 WP_014416873.1 competence protein ComJ Regulator
  V7S31_RS03130 nucA/comI 609839..610276 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  V7S31_RS03135 hxlB 610634..611191 (-) 558 WP_015239129.1 6-phospho-3-hexuloisomerase -
  V7S31_RS03140 hxlA 611188..611823 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  V7S31_RS03145 - 612055..612417 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14893.89 Da        Isoelectric Point: 4.7846

>NTDB_id=947835 V7S31_RS03125 WP_014416873.1 609420..609818(-) (nin/comJ) [Bacillus velezensis strain M1]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLSFNIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=947835 V7S31_RS03125 WP_014416873.1 609420..609818(-) (nin/comJ) [Bacillus velezensis strain M1]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTCTTTTAATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C179

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

76.515

100

0.765