Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R8920_RS03570 Genome accession   NZ_AP028404
Coordinates   716799..717347 (-) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain BCH-11568     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 711799..722347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8920_RS03540 (B11568_06990) ctsT 711842..712147 (-) 306 WP_002790525.1 hypothetical protein Machinery gene
  R8920_RS03545 (B11568_07000) proC 712144..712881 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  R8920_RS03550 (B11568_07010) fliW 712881..713270 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  R8920_RS03555 (B11568_07020) - 713434..714081 (+) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  R8920_RS03560 (B11568_07030) lon 714097..716472 (+) 2376 WP_002777089.1 endopeptidase La -
  R8920_RS03565 (B11568_07040) rpsR 716528..716788 (-) 261 WP_002777087.1 30S ribosomal protein S18 -
  R8920_RS03570 (B11568_07050) ssb 716799..717347 (-) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  R8920_RS03575 (B11568_07060) rpsF 717356..717733 (-) 378 WP_002777082.1 30S ribosomal protein S6 -
  R8920_RS03580 (B11568_07070) - 718013..719284 (+) 1272 WP_002777080.1 MFS transporter -
  R8920_RS03585 (B11568_07080) - 719284..720285 (+) 1002 WP_002777078.1 sugar phosphate isomerase/epimerase -
  R8920_RS03590 - 720356..721134 (-) 779 Protein_700 DUF535 family protein -
  R8920_RS03595 (B11568_07110) rseP 721131..722234 (-) 1104 WP_002787897.1 RIP metalloprotease RseP -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=94658 R8920_RS03570 WP_002777084.1 716799..717347(-) (ssb) [Campylobacter coli strain BCH-11568]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=94658 R8920_RS03570 WP_002777084.1 716799..717347(-) (ssb) [Campylobacter coli strain BCH-11568]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCAGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379

Multiple sequence alignment