Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   R8920_RS03540 Genome accession   NZ_AP028404
Coordinates   711842..712147 (-) Length   101 a.a.
NCBI ID   WP_002790525.1    Uniprot ID   -
Organism   Campylobacter coli strain BCH-11568     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 706842..717147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8920_RS03505 (B11568_06920) - 707257..708018 (+) 762 WP_025431509.1 ATP-binding protein -
  R8920_RS03510 (B11568_06930) - 708015..708698 (+) 684 WP_002791740.1 3-methyladenine DNA glycosylase -
  R8920_RS03515 (B11568_06940) thiD 708698..709510 (+) 813 WP_002786353.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  R8920_RS03520 (B11568_06950) thiE 709500..710132 (+) 633 WP_002783359.1 thiamine phosphate synthase -
  R8920_RS03525 (B11568_06960) - 710110..710739 (+) 630 WP_002783358.1 uroporphyrinogen-III synthase -
  R8920_RS03530 (B11568_06970) - 710732..711184 (-) 453 WP_002777117.1 hypothetical protein -
  R8920_RS03535 (B11568_06980) - 711181..711849 (-) 669 WP_002790524.1 hypothetical protein -
  R8920_RS03540 (B11568_06990) ctsT 711842..712147 (-) 306 WP_002790525.1 hypothetical protein Machinery gene
  R8920_RS03545 (B11568_07000) proC 712144..712881 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  R8920_RS03550 (B11568_07010) fliW 712881..713270 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  R8920_RS03555 (B11568_07020) - 713434..714081 (+) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  R8920_RS03560 (B11568_07030) lon 714097..716472 (+) 2376 WP_002777089.1 endopeptidase La -
  R8920_RS03565 (B11568_07040) rpsR 716528..716788 (-) 261 WP_002777087.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 12410.27 Da        Isoelectric Point: 6.0617

>NTDB_id=94656 R8920_RS03540 WP_002790525.1 711842..712147(-) (ctsT) [Campylobacter coli strain BCH-11568]
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFINDN
IFQFKKLHIQNQDYSLYFYDE

Nucleotide


Download         Length: 306 bp        

>NTDB_id=94656 R8920_RS03540 WP_002790525.1 711842..712147(-) (ctsT) [Campylobacter coli strain BCH-11568]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTATAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

48.98

97.03

0.475