Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   WBM82_RS02455 Genome accession   NZ_CP147494
Coordinates   364473..364871 (-) Length   132 a.a.
NCBI ID   WP_015715226.1    Uniprot ID   A0AA96URL7
Organism   Bacillus subtilis strain YT1     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 359473..369871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBM82_RS02420 (WBM82_02425) - 360221..360418 (+) 198 WP_119122841.1 hypothetical protein -
  WBM82_RS02425 (WBM82_02430) yckC 360437..360892 (+) 456 WP_029727075.1 RDD family protein -
  WBM82_RS02430 (WBM82_02435) yckD 360974..361306 (+) 333 WP_248719472.1 YckD family protein -
  WBM82_RS02435 (WBM82_02440) - 361434..361856 (+) 423 WP_174616579.1 MarR family transcriptional regulator -
  WBM82_RS02440 (WBM82_02445) - 361844..362185 (+) 342 WP_032724911.1 DUF3147 family protein -
  WBM82_RS02445 (WBM82_02450) - 362204..362932 (+) 729 WP_160221337.1 AAA family ATPase -
  WBM82_RS02450 (WBM82_02455) bglC 363003..364436 (+) 1434 WP_029727076.1 6-phospho-beta-glucosidase -
  WBM82_RS02455 (WBM82_02460) nin/comJ 364473..364871 (-) 399 WP_015715226.1 DNA-entry nuclease inhibitor Regulator
  WBM82_RS02460 (WBM82_02465) nucA/comI 364898..365347 (-) 450 WP_003234608.1 DNA-entry nuclease Machinery gene
  WBM82_RS02465 (WBM82_02470) tlpC 365515..367236 (-) 1722 WP_029727077.1 methyl-accepting chemotaxis protein TlpC -
  WBM82_RS02470 (WBM82_02475) hxlB 367347..367904 (-) 558 WP_003234605.1 6-phospho-3-hexuloisomerase -
  WBM82_RS02475 (WBM82_02480) hxlA 367910..368542 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  WBM82_RS02480 (WBM82_02485) hxlR 368776..369138 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14935.90 Da        Isoelectric Point: 4.8991

>NTDB_id=946388 WBM82_RS02455 WP_015715226.1 364473..364871(-) (nin/comJ) [Bacillus subtilis strain YT1]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILLRLNSSETVSSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=946388 WBM82_RS02455 WP_015715226.1 364473..364871(-) (nin/comJ) [Bacillus subtilis strain YT1]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAGCTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

98.485

100

0.985