Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   WBI56_RS18015 Genome accession   NZ_CP147492
Coordinates   3480448..3481137 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain MC4-2     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3475448..3486137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBI56_RS17980 (WBI56_17980) flgN 3475628..3476110 (-) 483 WP_077671017.1 flagellar protein FlgN -
  WBI56_RS17985 (WBI56_17985) flgM 3476126..3476392 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  WBI56_RS17990 (WBI56_17990) yvyF 3476473..3476892 (-) 420 WP_024572694.1 TIGR03826 family flagellar region protein -
  WBI56_RS17995 (WBI56_17995) comFC 3476966..3477688 (-) 723 WP_139345375.1 comF operon protein ComFC Machinery gene
  WBI56_RS18000 (WBI56_18000) comFB 3477652..3477948 (-) 297 WP_015483764.1 late competence protein ComFB -
  WBI56_RS18005 (WBI56_18005) comFA 3478008..3479399 (-) 1392 WP_338731154.1 ATP-dependent helicase ComFA Machinery gene
  WBI56_RS18010 (WBI56_18010) fakBA 3479505..3480350 (-) 846 WP_003227986.1 DegV family protein -
  WBI56_RS18015 (WBI56_18015) degU 3480448..3481137 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  WBI56_RS18020 (WBI56_18020) degS 3481220..3482377 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  WBI56_RS18025 (WBI56_18025) - 3482594..3483247 (+) 654 WP_014481055.1 YigZ family protein -
  WBI56_RS18030 (WBI56_18030) - 3483247..3484239 (+) 993 WP_014481056.1 LCP family protein -
  WBI56_RS18035 (WBI56_18035) - 3484838..3485302 (+) 465 WP_338731159.1 hypothetical protein -
  WBI56_RS18040 (WBI56_18040) - 3485351..3485806 (+) 456 WP_014481057.1 hypothetical protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=946373 WBI56_RS18015 WP_003219701.1 3480448..3481137(-) (degU) [Bacillus subtilis strain MC4-2]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=946373 WBI56_RS18015 WP_003219701.1 3480448..3481137(-) (degU) [Bacillus subtilis strain MC4-2]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTATACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1