Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   WBI56_RS18005 Genome accession   NZ_CP147492
Coordinates   3478008..3479399 (-) Length   463 a.a.
NCBI ID   WP_338731154.1    Uniprot ID   -
Organism   Bacillus subtilis strain MC4-2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3473008..3484399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBI56_RS17970 (WBI56_17970) flgL 3473179..3474075 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  WBI56_RS17975 (WBI56_17975) flgK 3474086..3475609 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  WBI56_RS17980 (WBI56_17980) flgN 3475628..3476110 (-) 483 WP_077671017.1 flagellar protein FlgN -
  WBI56_RS17985 (WBI56_17985) flgM 3476126..3476392 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  WBI56_RS17990 (WBI56_17990) yvyF 3476473..3476892 (-) 420 WP_024572694.1 TIGR03826 family flagellar region protein -
  WBI56_RS17995 (WBI56_17995) comFC 3476966..3477688 (-) 723 WP_139345375.1 comF operon protein ComFC Machinery gene
  WBI56_RS18000 (WBI56_18000) comFB 3477652..3477948 (-) 297 WP_015483764.1 late competence protein ComFB -
  WBI56_RS18005 (WBI56_18005) comFA 3478008..3479399 (-) 1392 WP_338731154.1 ATP-dependent helicase ComFA Machinery gene
  WBI56_RS18010 (WBI56_18010) fakBA 3479505..3480350 (-) 846 WP_003227986.1 DegV family protein -
  WBI56_RS18015 (WBI56_18015) degU 3480448..3481137 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  WBI56_RS18020 (WBI56_18020) degS 3481220..3482377 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  WBI56_RS18025 (WBI56_18025) - 3482594..3483247 (+) 654 WP_014481055.1 YigZ family protein -
  WBI56_RS18030 (WBI56_18030) - 3483247..3484239 (+) 993 WP_014481056.1 LCP family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52600.58 Da        Isoelectric Point: 9.8518

>NTDB_id=946372 WBI56_RS18005 WP_338731154.1 3478008..3479399(-) (comFA) [Bacillus subtilis strain MC4-2]
MNVPVEKNSSFSRELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYYSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWKEENESNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLYSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVYCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIYFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=946372 WBI56_RS18005 WP_338731154.1 3478008..3479399(-) (comFA) [Bacillus subtilis strain MC4-2]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCTAGAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTATTCTTTTTATCACTCATCTGGTAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGAAAATGA
ATCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAACAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTATATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTATATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATTTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTACTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.272

100

0.983