Detailed information NTG0946324

Bioinformatically predicted

Overview

• Name: med
• Type: Regulator
• Locus tag: WBI56_RS06065
• Genome accession: NZ_CP147492
• Coordinates: 1175720..1176673 (+)
• Length: 317 a.a.
• NCBI ID: WP_014476425.1
• Uniprot ID: A0A0K6M9I2
• Organism: Bacillus subtilis strain MC4-2
• Function: regulation of regulators (predicted from homology) Competence regulation

Genomic Context

Location: 1170720..1181673

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WBI56_RS06040 (WBI56_06040)	argF	1172550..1173509 (+)	960	WP_032721338.1	ornithine carbamoyltransferase	-
WBI56_RS06045 (WBI56_06045)	yjzC	1173595..1173774 (+)	180	WP_003245356.1	YjzC family protein	-
WBI56_RS06050 (WBI56_06050)	yjzD	1173821..1174006 (-)	186	WP_003245236.1	DUF2929 domain-containing protein	-
WBI56_RS06055 (WBI56_06055)	-	1174257..1174991 (+)	735	WP_032721340.1	hypothetical protein	-
WBI56_RS06060 (WBI56_06060)	-	1175072..1175629 (+)	558	WP_003232974.1	hypothetical protein	-
WBI56_RS06065 (WBI56_06065)	med	1175720..1176673 (+)	954	WP_014476425.1	transcriptional regulator Med	Regulator
WBI56_RS06070 (WBI56_06070)	comZ	1176688..1176879 (+)	192	WP_003224559.1	ComG operon transcriptional repressor ComZ	Regulator
WBI56_RS06075 (WBI56_06075)	yjzB	1176909..1177145 (-)	237	WP_015383342.1	spore coat protein YjzB	-
WBI56_RS06080 (WBI56_06080)	fabH	1177310..1178248 (+)	939	WP_003232971.1	beta-ketoacyl-ACP synthase III	-
WBI56_RS06085 (WBI56_06085)	fabF	1178271..1179512 (+)	1242	WP_003244890.1	beta-ketoacyl-ACP synthase II	-
WBI56_RS06090 (WBI56_06090)	yjaZ	1179588..1180373 (+)	786	WP_212129612.1	DUF2268 domain-containing protein	-
WBI56_RS06095 (WBI56_06095)	appD	1180532..1181518 (+)	987	WP_003232965.1	oligopeptide ABC transporter ATP-binding protein AppD	-

Sequence

Protein

• Length: 317 a.a.
• Molecular weight: 35310.84 Da
• Isoelectric Point: 4.6031

>NTDB_id=946324 WBI56_RS06065 WP_014476425.1 1175720..1176673(+) (med) [Bacillus subtilis strain MC4-2]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide

• Length: 954 bp

>NTDB_id=946324 WBI56_RS06065 WP_014476425.1 1175720..1176673(+) (med) [Bacillus subtilis strain MC4-2]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACGAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTCTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATTGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAATACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGACA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAATAA

Domains

Predicted by InterproScan.

• ABC transporter substrate-binding protein PnrA-like (Bmp) (27-317)

3D structure

• AlphaFold DB: A0A0K6M9I2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
med	Bacillus subtilis subsp. subtilis str. 168	99.685	100	0.997