Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   WBI56_RS01975 Genome accession   NZ_CP147492
Coordinates   370248..370646 (-) Length   132 a.a.
NCBI ID   WP_257433798.1    Uniprot ID   -
Organism   Bacillus subtilis strain MC4-2     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 365248..375646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WBI56_RS01940 (WBI56_01940) - 365996..366191 (+) 196 Protein_338 hypothetical protein -
  WBI56_RS01945 (WBI56_01945) yckC 366210..366665 (+) 456 WP_024572178.1 RDD family protein -
  WBI56_RS01950 (WBI56_01950) yckD 366747..367079 (+) 333 WP_042977218.1 YckD family protein -
  WBI56_RS01955 (WBI56_01955) - 367207..367629 (+) 423 WP_338732227.1 MarR family transcriptional regulator -
  WBI56_RS01960 (WBI56_01960) - 367617..367958 (+) 342 WP_032724911.1 DUF3147 family protein -
  WBI56_RS01965 (WBI56_01965) - 367977..368705 (+) 729 WP_338732229.1 AAA family ATPase -
  WBI56_RS01970 (WBI56_01970) bglC 368778..370211 (+) 1434 WP_338732231.1 6-phospho-beta-glucosidase -
  WBI56_RS01975 (WBI56_01975) nin/comJ 370248..370646 (-) 399 WP_257433798.1 DNA-entry nuclease inhibitor Regulator
  WBI56_RS01980 (WBI56_01980) nucA/comI 370673..371122 (-) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  WBI56_RS01985 (WBI56_01985) tlpC 371290..373011 (-) 1722 WP_338732236.1 methyl-accepting chemotaxis protein TlpC -
  WBI56_RS01990 (WBI56_01990) hxlB 373122..373679 (-) 558 WP_338732238.1 6-phospho-3-hexuloisomerase -
  WBI56_RS01995 (WBI56_01995) hxlA 373685..374317 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  WBI56_RS02000 (WBI56_02000) hxlR 374549..374911 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14968.93 Da        Isoelectric Point: 4.7078

>NTDB_id=946309 WBI56_RS01975 WP_257433798.1 370248..370646(-) (nin/comJ) [Bacillus subtilis strain MC4-2]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILLRLNSSETVSSYETKVTVPF
HVTENGIHIESIMSKRLFFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=946309 WBI56_RS01975 WP_257433798.1 370248..370646(-) (nin/comJ) [Bacillus subtilis strain MC4-2]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAGCTCCTACGAAACAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTGTTCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

96.97

100

0.97