Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V7R92_RS03445 Genome accession   NZ_CP147490
Coordinates   707639..708205 (-) Length   188 a.a.
NCBI ID   WP_338757718.1    Uniprot ID   -
Organism   Levilactobacillus brevis strain LMT1-73     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 702639..713205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V7R92_RS03425 - 703018..703794 (-) 777 WP_338757716.1 D-alanyl-D-alanine carboxypeptidase -
  V7R92_RS03430 - 704403..706010 (+) 1608 WP_338757717.1 peptide ABC transporter substrate-binding protein -
  V7R92_RS03435 - 706041..707228 (+) 1188 WP_085768298.1 amidohydrolase family protein -
  V7R92_RS03440 rpsR 707374..707610 (-) 237 WP_011666824.1 30S ribosomal protein S18 -
  V7R92_RS03445 ssb 707639..708205 (-) 567 WP_338757718.1 single-stranded DNA-binding protein Machinery gene
  V7R92_RS03450 rpsF 708239..708535 (-) 297 WP_043023114.1 30S ribosomal protein S6 -
  V7R92_RS03455 gyrA 709199..711679 (-) 2481 WP_338758055.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20593.28 Da        Isoelectric Point: 4.9305

>NTDB_id=946282 V7R92_RS03445 WP_338757718.1 707639..708205(-) (ssb) [Levilactobacillus brevis strain LMT1-73]
MINRVVLTGRLTRDVDLRYTQGGAAVATFTLAVDRRFTNQQGEREADFVSCVIWRKSAENFANFFHKGSLVGIEGRIQTR
NYENQQGQRVYVTEVVVENFSFLEPRSRNENNGGGNYNGGSMNNNAPQNQNQNANPYMSGNPAPAAPSQGMAPNSGNNNQ
NSHANNNAADPFANSGDSIDISDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=946282 V7R92_RS03445 WP_338757718.1 707639..708205(-) (ssb) [Levilactobacillus brevis strain LMT1-73]
ATGATCAACCGAGTAGTACTTACTGGCCGACTAACGCGGGATGTTGACTTACGCTACACCCAAGGCGGTGCTGCTGTAGC
CACCTTCACGCTGGCCGTTGATCGGCGGTTCACCAACCAACAAGGTGAACGAGAAGCTGATTTCGTAAGTTGCGTCATTT
GGCGCAAGTCCGCGGAAAACTTTGCCAACTTCTTCCACAAGGGTTCCCTTGTCGGTATTGAAGGGCGCATCCAGACCCGG
AATTACGAAAATCAACAGGGCCAACGGGTTTATGTCACCGAAGTGGTTGTCGAGAACTTTTCGTTCTTGGAACCCCGTTC
TCGTAACGAGAACAACGGTGGTGGAAACTACAATGGCGGCTCCATGAATAATAATGCTCCTCAAAATCAGAATCAAAATG
CCAACCCATACATGAGTGGGAATCCAGCTCCGGCTGCGCCTTCTCAAGGTATGGCCCCGAATTCTGGAAATAACAATCAG
AACAGTCATGCGAACAACAATGCAGCTGATCCGTTTGCCAATTCTGGTGATTCCATTGACATTTCCGATGATGATTTACC
GTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

63.298

100

0.633
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.383

100

0.564