Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   V6U91_RS02860 Genome accession   NZ_CP147221
Coordinates   552561..553211 (-) Length   216 a.a.
NCBI ID   WP_002866466.1    Uniprot ID   A0AAN4A9Z1
Organism   Campylobacter jejuni strain LZ-CJ     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 547561..558211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U91_RS02825 - 547939..548943 (+) 1005 WP_240392338.1 hypothetical protein -
  V6U91_RS02830 tlyA 548940..549701 (+) 762 WP_283784529.1 TlyA family RNA methyltransferase -
  V6U91_RS02835 ribF 549667..550521 (+) 855 WP_283784528.1 bifunctional riboflavin kinase/FAD synthetase -
  V6U91_RS02840 cmoA 550508..551218 (+) 711 WP_167842718.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  V6U91_RS02845 - 551208..551429 (-) 222 WP_002859102.1 EexN family lipoprotein -
  V6U91_RS02850 - 551426..551860 (-) 435 WP_052781974.1 EexN family lipoprotein -
  V6U91_RS02855 - 551918..552550 (-) 633 WP_052781975.1 trimeric intracellular cation channel family protein -
  V6U91_RS02860 CJE0566 552561..553211 (-) 651 WP_002866466.1 DNA/RNA non-specific endonuclease Regulator
  V6U91_RS02865 nth 553208..553834 (-) 627 WP_002866467.1 endonuclease III -
  V6U91_RS02870 peb4 553915..554736 (+) 822 WP_002876664.1 peptidylprolyl isomerase PEB4 -
  V6U91_RS02875 fbaA 554736..555800 (+) 1065 WP_002866470.1 class II fructose-bisphosphate aldolase -
  V6U91_RS02880 - 555895..557337 (+) 1443 WP_002866471.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25450.22 Da        Isoelectric Point: 9.7361

>NTDB_id=946254 V6U91_RS02860 WP_002866466.1 552561..553211(-) (CJE0566) [Campylobacter jejuni strain LZ-CJ]
MKIFIFLLAISLNIFALESYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQIAQINNKIWNEIEQRERNLAFKFQSIEVLN
LVLYDKEPLYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=946254 V6U91_RS02860 WP_002866466.1 552561..553211(-) (CJE0566) [Campylobacter jejuni strain LZ-CJ]
ATGAAAATTTTCATCTTTTTACTCGCTATATCTCTTAATATTTTTGCCTTAGAATCTTACAAACCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCCGTTGCTTATAAAGTAGAAGCTTCAAATTTAAAAGATAAACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCGCC
TAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGCAATATTACCCCACAAATTGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAGCAAAGAGAAAGAAATTTGGCTTTCAAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACTATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

70.051

91.204

0.639
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63