Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ACF0HW_RS18235 Genome accession   NZ_CP171208
Coordinates   3669584..3669874 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain HN11     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3664584..3674874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF0HW_RS18220 - 3664806..3666131 (-) 1326 WP_023356663.1 G5 and 3D domain-containing protein -
  ACF0HW_RS18225 - 3666266..3667033 (-) 768 WP_041482169.1 TatD family hydrolase -
  ACF0HW_RS18230 metG 3667109..3669100 (-) 1992 WP_011996169.1 methionine--tRNA ligase -
  ACF0HW_RS18235 abrB 3669584..3669874 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  ACF0HW_RS18240 rsmI 3669924..3670805 (-) 882 WP_011996168.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ACF0HW_RS18245 - 3670780..3671079 (-) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  ACF0HW_RS18250 - 3671066..3671809 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  ACF0HW_RS18255 yabA 3671870..3672229 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  ACF0HW_RS18260 yaaT 3672244..3673071 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT Regulator
  ACF0HW_RS18265 holB 3673074..3674063 (-) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  ACF0HW_RS18270 - 3674075..3674515 (-) 441 WP_011996167.1 YaaR family protein -
  ACF0HW_RS18275 darA 3674528..3674857 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=945761 ACF0HW_RS18235 WP_169510469.1 3669584..3669874(+) (abrB) [Bacillus amyloliquefaciens strain HN11]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=945761 ACF0HW_RS18235 WP_169510469.1 3669584..3669874(+) (abrB) [Bacillus amyloliquefaciens strain HN11]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterProScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979