Detailed information NTG0945656

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: ACF0HW_RS05530
• Genome accession: NZ_CP171208
• Coordinates: 1077633..1078895 (+)
• Length: 420 a.a.
• NCBI ID: WP_007408149.1
• Uniprot ID: A7Z7B2
• Organism: Bacillus amyloliquefaciens strain HN11
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1072633..1083895

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACF0HW_RS05510	leuC	1072715..1074133 (+)	1419	WP_007408145.1	3-isopropylmalate dehydratase large subunit	-
ACF0HW_RS05515	leuD	1074149..1074748 (+)	600	WP_007408146.1	3-isopropylmalate dehydratase small subunit	-
ACF0HW_RS05520	ddcA	1074866..1075870 (+)	1005	WP_012118117.1	DNA damage checkpoint antagonist DdcA	-
ACF0HW_RS05525	tig	1076087..1077361 (+)	1275	WP_003152618.1	trigger factor	-
ACF0HW_RS05530	clpX	1077633..1078895 (+)	1263	WP_007408149.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
ACF0HW_RS05535	lonB	1079045..1080703 (+)	1659	WP_012118116.1	ATP-dependent protease LonB	-
ACF0HW_RS05540	lon	1080903..1083227 (+)	2325	WP_007612896.1	endopeptidase La	-
ACF0HW_RS05545	yihA	1083224..1083811 (+)	588	WP_003152626.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-

Sequence

Protein

• Length: 420 a.a.
• Molecular weight: 46247.01 Da
• Isoelectric Point: 4.4911

>NTDB_id=945656 ACF0HW_RS05530 WP_007408149.1 1077633..1078895(+) (clpX) [Bacillus amyloliquefaciens strain HN11]
MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVPKPQEIREILNEYVIGQDQ
AKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILL
KLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI
LFICGGAFDGIEQIIKRRLGQKVIGFGSDNKAADLEKEELLSKVLPEDLLRFGLIPEFIGRLPVIASLEQLDETALVEIL
TKPKNALVKQYKKMLELDDVELEFEDEALSEIAKKAIERKTGARGLRSIIEGIMLDVMFDLPSRDDIEKCVITGATVADG
EAPRLVLKDGTVVGQDKTSA

Nucleotide

• Length: 1263 bp

>NTDB_id=945656 ACF0HW_RS05530 WP_007408149.1 1077633..1078895(+) (clpX) [Bacillus amyloliquefaciens strain HN11]
ATGTTTAAATTCAACGAGGAAAAAGGACAATTGAAATGCTCGTTCTGCGGAAAAACGCAAGATCAGGTTCGTAAGCTGGT
TGCAGGACCGGGTGTATATATATGCGACGAATGTATTGAGCTCTGTACAGAAATCGTAGAGGAAGAGCTCGGTACAGAAG
AAGAAGTCGAATTTAAAGACGTTCCGAAGCCGCAGGAAATCCGTGAGATTCTGAATGAATATGTCATCGGACAGGATCAG
GCGAAGAAATCACTTGCGGTTGCGGTATACAACCATTACAAACGCATCAACTCCAACAGTAAAGTGGATGATGTCGAGCT
TTCTAAAAGTAATATTTCTTTAATCGGACCGACTGGAAGCGGGAAAACACTTCTTGCCCAGACGCTTGCGCGTATTCTGA
ACGTGCCGTTTGCGATCGCGGACGCTACATCTCTGACTGAAGCCGGATATGTCGGTGAGGACGTAGAAAACATCCTCCTC
AAGCTGATTCAGGCAGCAGACTATGATGTGGAAAAAGCAGAAAAAGGCATTATTTATATCGATGAAATCGATAAAGTAGC
GCGAAAATCTGAAAACCCATCCATTACACGCGACGTATCAGGCGAAGGCGTTCAGCAGGCGTTGCTGAAAATTCTTGAAG
GAACGGTTGCAAGCGTGCCGCCTCAAGGAGGACGCAAACATCCTCATCAGGAATTCATCCAGATCGATACGACGAATATT
CTGTTCATTTGCGGCGGTGCATTTGACGGCATTGAACAAATTATCAAACGCCGTCTCGGACAAAAAGTCATCGGTTTCGG
CTCAGATAATAAAGCGGCAGACCTTGAAAAAGAAGAACTGCTTTCTAAAGTTCTTCCGGAAGACTTGCTCCGTTTCGGTC
TGATTCCTGAATTCATCGGCCGTCTTCCTGTCATTGCAAGCCTTGAGCAGCTTGACGAAACGGCACTGGTTGAAATTCTG
ACTAAACCGAAAAACGCACTCGTCAAACAATACAAGAAAATGTTAGAACTTGATGATGTCGAGCTTGAATTTGAAGACGA
GGCATTATCTGAAATTGCGAAAAAAGCGATCGAGCGTAAAACAGGCGCACGCGGCCTGCGTTCTATCATTGAAGGCATCA
TGCTTGACGTCATGTTTGATCTGCCGTCCCGCGATGATATTGAAAAATGTGTCATTACCGGAGCGACAGTCGCAGACGGT
GAAGCACCGCGTCTTGTATTAAAAGACGGCACAGTTGTCGGCCAAGATAAAACATCAGCATAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (109-305)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (311-389)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

3D structure

• AlphaFold DB: A7Z7B2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	68.262	94.524	0.645
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	59.158	96.19	0.569