Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R8588_RS05315 Genome accession   NZ_AP028401
Coordinates   1011189..1011737 (+) Length   182 a.a.
NCBI ID   WP_002860190.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11527     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1006189..1016737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8588_RS05280 - 1006661..1006778 (+) 118 Protein_1017 N-acetyltransferase -
  R8588_RS05285 - 1006842..1007462 (+) 621 Protein_1018 nitroreductase family protein -
  R8588_RS05290 (B11527_10380) rdxA 1007462..1008067 (+) 606 WP_060816223.1 NAD(P)H-dependent oxidoreductase -
  R8588_RS05295 (B11527_10390) pgsA 1008218..1008754 (+) 537 WP_002777068.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  R8588_RS05300 (B11527_10400) rseP 1008751..1009857 (+) 1107 WP_317649896.1 RIP metalloprotease RseP -
  R8588_RS05305 (B11527_10410) - 1009850..1010716 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  R8588_RS05310 (B11527_10420) rpsF 1010803..1011180 (+) 378 WP_060816225.1 30S ribosomal protein S6 -
  R8588_RS05315 (B11527_10430) ssb 1011189..1011737 (+) 549 WP_002860190.1 single-stranded DNA-binding protein Machinery gene
  R8588_RS05320 (B11527_10440) rpsR 1011748..1012008 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  R8588_RS05325 (B11527_10450) lon 1012068..1014443 (-) 2376 WP_002852988.1 endopeptidase La -
  R8588_RS05330 (B11527_10460) - 1014460..1015107 (-) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  R8588_RS05335 (B11527_10470) fliW 1015268..1015657 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  R8588_RS05340 (B11527_10480) proC 1015657..1016388 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  R8588_RS05345 (B11527_10490) ctsT 1016385..1016687 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20596.50 Da        Isoelectric Point: 5.0431

>NTDB_id=94557 R8588_RS05315 WP_002860190.1 1011189..1011737(+) (ssb) [Campylobacter jejuni strain BCH-11527]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=94557 R8588_RS05315 WP_002860190.1 1011189..1011737(+) (ssb) [Campylobacter jejuni strain BCH-11527]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGTGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39
  ssb Vibrio cholerae strain A1552

37.5

96.703

0.363

Multiple sequence alignment