Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   V4Q90_RS07480 Genome accession   NZ_CP146990
Coordinates   1702334..1702993 (-) Length   219 a.a.
NCBI ID   WP_011947563.1    Uniprot ID   -
Organism   Legionella pneumophila strain LEG1116     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1697334..1707993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4Q90_RS07465 (V4Q90_07445) - 1698467..1699126 (+) 660 WP_015961724.1 hypothetical protein -
  V4Q90_RS07470 (V4Q90_07450) - 1699294..1700442 (+) 1149 WP_350534683.1 phage tail protein -
  V4Q90_RS07475 (V4Q90_07455) uvrC 1700466..1702322 (-) 1857 WP_015961726.1 excinuclease ABC subunit UvrC -
  V4Q90_RS07480 (V4Q90_07460) letA 1702334..1702993 (-) 660 WP_011947563.1 two-component system response regulator LetA Regulator
  V4Q90_RS07485 (V4Q90_07465) phhA 1703118..1703936 (-) 819 WP_015961727.1 phenylalanine 4-monooxygenase -
  V4Q90_RS07490 (V4Q90_07470) - 1704376..1705473 (+) 1098 WP_015961728.1 competence/damage-inducible protein A -
  V4Q90_RS07495 (V4Q90_07475) cgtA 1705432..1706457 (-) 1026 WP_015961729.1 Obg family GTPase CgtA -
  V4Q90_RS07500 (V4Q90_07480) rpmA 1706671..1706949 (-) 279 WP_010948350.1 50S ribosomal protein L27 -
  V4Q90_RS07505 (V4Q90_07485) rplU 1706962..1707273 (-) 312 WP_010948351.1 50S ribosomal protein L21 -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24566.53 Da        Isoelectric Point: 5.1572

>NTDB_id=945410 V4Q90_RS07480 WP_011947563.1 1702334..1702993(-) (letA) [Legionella pneumophila strain LEG1116]
MIKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGWEVTRRLKKTNPNIKVIA
VTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQEPQDSPFDLLSEREMQVMLMI
TSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRIIEHPNDLSQDD

Nucleotide


Download         Length: 660 bp        

>NTDB_id=945410 V4Q90_RS07480 WP_011947563.1 1702334..1702993(-) (letA) [Legionella pneumophila strain LEG1116]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTAGAATGGGCATTCGACGATTGCTTGAAGATATGTCGGATGT
TGATGTGGTTGCAGATGCTGAAAGTGGTGAGCAGGCTTTAGCTTATGTGAAAACCCACTCCCCTGATGTCGTATTATTAG
ACATGAAAATGCCTGGGATAGATGGGTGGGAAGTGACACGTCGTTTAAAAAAAACAAACCCAAATATTAAAGTCATAGCC
GTTACAGCTATTTGCTCAGATCCTCTCCCTACTCGAGTATTGCAATTAGGTGCTATGGGATACCTTACTAAAGAATCAGG
GGCTGAAGAAATGGCTGCTGCAATTCGTAAAGTGGCTAAAGGTGAGAAATATCTTAGTGCCGAGATTGCACAAAAAATGG
CAATTAATAGTCTTCAGGAGCCTCAGGATTCCCCCTTTGATTTATTGTCTGAAAGAGAAATGCAAGTCATGTTGATGATT
ACGAGCGGCATGAATGTACAAGACATTGCTGATAGATTATTTTTAAGTAGTAAAACCATCAATGGTTATCGATATAGGAT
GTTTGAAAAATTGGGGATTAAAAATGATGTGGAGCTTACTTATTTGGCTATGAAGCACCGCATTATTGAACACCCCAATG
ATTTGTCACAAGATGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

100

100

1
  letA Legionella pneumophila strain ERS1305867

100

100

1