Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   V9L13_RS12890 Genome accession   NZ_CP146986
Coordinates   2875225..2875860 (-) Length   211 a.a.
NCBI ID   WP_003227083.1    Uniprot ID   -
Organism   Pseudomonas sp. RSB 5.4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2870225..2880860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9L13_RS12860 (V9L13_12860) murB 2871342..2872361 (-) 1020 WP_338802695.1 UDP-N-acetylmuramate dehydrogenase -
  V9L13_RS12865 (V9L13_12865) - 2872358..2872822 (-) 465 WP_338802696.1 low molecular weight protein-tyrosine-phosphatase -
  V9L13_RS12870 (V9L13_12870) kdsB 2872822..2873586 (-) 765 WP_103522244.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V9L13_RS12875 (V9L13_12875) - 2873583..2873768 (-) 186 WP_003179363.1 Trm112 family protein -
  V9L13_RS12880 (V9L13_12880) lpxK 2873790..2874800 (-) 1011 WP_338802698.1 tetraacyldisaccharide 4'-kinase -
  V9L13_RS12885 (V9L13_12885) - 2874800..2875228 (-) 429 WP_025112998.1 biopolymer transporter ExbD -
  V9L13_RS12890 (V9L13_12890) exbB 2875225..2875860 (-) 636 WP_003227083.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V9L13_RS12895 (V9L13_12895) comA 2875972..2878185 (-) 2214 WP_338802699.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V9L13_RS12900 (V9L13_12900) - 2878322..2878840 (+) 519 WP_003227088.1 DUF2062 domain-containing protein -
  V9L13_RS12905 (V9L13_12905) - 2878981..2879760 (-) 780 WP_003227090.1 ABC transporter permease -
  V9L13_RS12910 (V9L13_12910) - 2879757..2880689 (-) 933 WP_007967569.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22917.00 Da        Isoelectric Point: 6.8768

>NTDB_id=945368 V9L13_RS12890 WP_003227083.1 2875225..2875860(-) (exbB) [Pseudomonas sp. RSB 5.4]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGDKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=945368 V9L13_RS12890 WP_003227083.1 2875225..2875860(-) (exbB) [Pseudomonas sp. RSB 5.4]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATTGTCGC
CGAGCGTCTGTGGACCCTGCGCGCCAGCCGCGTCACCCCCGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAATAAAGAAAAACTCAAGGAACTGCGAGCCAATTCGCCGTTGGGTGAAATCCTCGCCGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCCGCGCGGGTGATTCACGAGCTCGAACGCTACGT
CAACGCGCTGGGCACGATTGCCGCCATGTCGCCGTTGCTGGGCCTGTTGGGCACGGTACTGGGCATGATCGACATTTTCA
GCGCCTTCACCGGTTCCGGCATGACCACCAACGCCTCGGTATTGGCCGGCGGTATCTCCAAGGCGCTGATCACAACGGCG
GCGGGCCTGATGGTCGGTATTCCGTCGGTGTTCTTCCACCGTTTCCTGCAGCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTCGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCCGGGGACAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.886

100

0.839