Detailed information NTG0945368

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: ACFXAC_RS12705
• Genome accession: NZ_CP170720
• Coordinates: 2623070..2624338 (+)
• Length: 422 a.a.
• NCBI ID: WP_015240288.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain JP5006
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2618070..2629338

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFXAC_RS12685 (ACFXAC_12685)	-	2619441..2620061 (-)	621	WP_088461189.1	lipopolysaccharide assembly protein LapB	-
ACFXAC_RS12690 (ACFXAC_12690)	mnmA	2620149..2621264 (-)	1116	WP_053573163.1	tRNA 2-thiouridine(34) synthase MnmA	-
ACFXAC_RS12695 (ACFXAC_12695)	-	2621301..2622440 (-)	1140	WP_039254379.1	cysteine desulfurase family protein	-
ACFXAC_RS12700 (ACFXAC_12700)	cymR	2622459..2622875 (-)	417	WP_003152730.1	cysteine metabolism transcriptional regulator CymR	-
ACFXAC_RS12705 (ACFXAC_12705)	rarA	2623070..2624338 (+)	1269	WP_015240288.1	replication-associated recombination protein A	Machinery gene
ACFXAC_RS12710 (ACFXAC_12710)	-	2624455..2625219 (-)	765	WP_015240289.1	ThiF family adenylyltransferase	-
ACFXAC_RS12720 (ACFXAC_12720)	aspS	2625545..2627323 (-)	1779	WP_053573162.1	aspartate--tRNA ligase	-
ACFXAC_RS12725 (ACFXAC_12725)	hisS	2627338..2628612 (-)	1275	WP_015417909.1	histidine--tRNA ligase	-
ACFXAC_RS12730 (ACFXAC_12730)	-	2628969..2629139 (-)	171	WP_012118083.1	YrzK family protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46661.51 Da
• Isoelectric Point: 7.9149

>NTDB_id=945368 ACFXAC_RS12705 WP_015240288.1 2623070..2624338(+) (rarA) [Bacillus amyloliquefaciens strain JP5006]
MKPLAYRMRPANIEDIIGQEHLVKEDKIIGRMVRAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIHNKKDME
IVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALER
ALTDEHRGLGSYSVSVDDDAMDHFAQGCGGDVRSALNALELAVLSTKESSDGTIRITRETAEECLQKKSYTHDKNGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESISRRLLVIAYEDIGLASPQAGPRVLSAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAISAVDEALKDIRTGKIGDVPKHLKDAHYKGAQELGRGIGYQYPHDFENGWVEQQYLPDPLKNKQYYKP
KQTGKFEAAIKQVYEKLMKQKK

Nucleotide

• Length: 1269 bp

>NTDB_id=945368 ACFXAC_RS12705 WP_015240288.1 2623070..2624338(+) (rarA) [Bacillus amyloliquefaciens strain JP5006]
ATGAAACCATTGGCGTATCGGATGCGGCCTGCCAATATCGAAGACATTATCGGCCAGGAACATTTGGTCAAAGAAGATAA
AATCATCGGCAGAATGGTGCGTGCAAAGCACTTATCATCCATGATCCTGTACGGGCCGCCGGGCATCGGAAAAACGTCCA
TCGCCACAGCGATCGCAGGATCGACAAGCATCGCATTCAGGAAATTGAATGCCGTCATTCATAATAAAAAAGACATGGAG
ATTGTCGTACAGGAAGCGAAAATGTCAGGCCAGGTCATTTTAATCCTTGACGAAGTGCACAGGCTTGATAAGGGAAAGCA
GGATTTTCTGCTGCCCTATTTAGAAAACGGCATGATTATTTTAATCGGCGCGACGACCGCCAACCCTTATCATGCCATTA
ACCCGGCCATCAGAAGCCGGACCCAGATCTTCGAGCTTGAACCGTTAACACCCGATCTGATCAAGCAGGCATTGGAAAGA
GCGCTCACAGATGAACACCGGGGACTCGGTTCCTACAGCGTTTCGGTGGACGACGACGCGATGGATCATTTCGCGCAAGG
GTGCGGAGGAGACGTCCGCTCCGCTTTGAACGCACTGGAGCTTGCCGTGCTCTCCACAAAGGAATCAAGCGACGGCACGA
TCCGGATTACACGGGAGACGGCGGAAGAATGTCTGCAGAAAAAAAGCTATACTCATGATAAAAACGGCGATGCGCATTAT
GACGTCTTATCCGCCTTCCAAAAATCGATCCGAGGCTCGGACGCAAACGCCGCCCTTCATTATCTGGCCCGTCTGATCGA
AGCCGGCGACCTTGAAAGCATATCAAGAAGGCTTCTCGTGATCGCCTATGAAGATATCGGCCTCGCAAGCCCGCAGGCAG
GCCCCCGGGTGCTGAGCGCGATTCAGACCGCAGAACGGATCGGCTTTCCGGAAGCGAGAATTCCGCTGGCCAATGCGGTA
ATCGAATTATGCCTCTCGCCAAAATCAAACTCCGCCATCTCAGCCGTTGATGAGGCGCTCAAAGACATCAGGACGGGTAA
AATCGGCGATGTGCCGAAACATTTAAAAGACGCCCACTATAAAGGGGCCCAAGAGCTCGGACGCGGGATCGGCTATCAAT
ATCCACATGATTTCGAGAACGGATGGGTCGAACAGCAATATTTGCCTGATCCGTTAAAAAACAAGCAATACTATAAACCG
AAACAAACGGGGAAATTTGAAGCCGCCATAAAGCAAGTGTATGAAAAACTGATGAAGCAGAAAAAATAA

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• AAA C-terminal domain (AAA_assoc_2) (172-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	91.211	99.763	0.91