Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   V9L13_RS12895 Genome accession   NZ_CP146986
Coordinates   2875972..2878185 (-) Length   737 a.a.
NCBI ID   WP_338802699.1    Uniprot ID   -
Organism   Pseudomonas sp. RSB 5.4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2870972..2883185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9L13_RS12860 (V9L13_12860) murB 2871342..2872361 (-) 1020 WP_338802695.1 UDP-N-acetylmuramate dehydrogenase -
  V9L13_RS12865 (V9L13_12865) - 2872358..2872822 (-) 465 WP_338802696.1 low molecular weight protein-tyrosine-phosphatase -
  V9L13_RS12870 (V9L13_12870) kdsB 2872822..2873586 (-) 765 WP_103522244.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V9L13_RS12875 (V9L13_12875) - 2873583..2873768 (-) 186 WP_003179363.1 Trm112 family protein -
  V9L13_RS12880 (V9L13_12880) lpxK 2873790..2874800 (-) 1011 WP_338802698.1 tetraacyldisaccharide 4'-kinase -
  V9L13_RS12885 (V9L13_12885) - 2874800..2875228 (-) 429 WP_025112998.1 biopolymer transporter ExbD -
  V9L13_RS12890 (V9L13_12890) exbB 2875225..2875860 (-) 636 WP_003227083.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V9L13_RS12895 (V9L13_12895) comA 2875972..2878185 (-) 2214 WP_338802699.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V9L13_RS12900 (V9L13_12900) - 2878322..2878840 (+) 519 WP_003227088.1 DUF2062 domain-containing protein -
  V9L13_RS12905 (V9L13_12905) - 2878981..2879760 (-) 780 WP_003227090.1 ABC transporter permease -
  V9L13_RS12910 (V9L13_12910) - 2879757..2880689 (-) 933 WP_007967569.1 ABC transporter ATP-binding protein -
  V9L13_RS12915 (V9L13_12915) - 2880823..2881446 (-) 624 WP_338802700.1 glutathione S-transferase -
  V9L13_RS12920 (V9L13_12920) - 2881490..2882149 (-) 660 WP_338802701.1 transglutaminase family protein -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 80975.43 Da        Isoelectric Point: 10.5643

>NTDB_id=945369 V9L13_RS12895 WP_338802699.1 2875972..2878185(-) (comA) [Pseudomonas sp. RSB 5.4]
MRTGMMALAAGLLVAGFLPVLPPVGLMMLLPMVGLMLLPFRSYPLAFLLFGFTWACVSAQWALDERLPAQLDGETRWVEG
RVVGLPQTSEGVVRFELADARSRHDRLPSLMRLAWYAGPAVKSGERWRLAVKLKRPGGLLNPDAFDYEAWLLAQRIGATG
TIKDGQRLAEANWAWRDGIRQRLLAVDAQGRAGALAALVLGDGSGLSREDWQILQDTGTVHLLVISGQHIGMLAAVMYLL
VAGLARYGCWPLRRPWLPWACGLAFAAALGYGLLAGFDVPVQRACVMVGLVLLWRLRFRHLGAWWPLLLALNAVLLLDPL
ASLRPGLWLSFAAVGILIITFGGRLGAWKWWQTWTRAQWLIALGLCPVLLALNLPISLSGPLANVLAVPWVSLLVLPPAL
LGTLLLPVPYVGAGLLWLAGGLIDWLFRGLSMIAGAWPAWISPSLPWWALLLGSLGAFLLLLPRGVPLRPLGWPLLLILV
APPRERVAEGLADIWQLDVGQGLAILIRTRHHTLLYDAGPRFGDFDLGERVVLPTLHKLGVERIDLMLLSHADADHAGGA
LAVSRGLKVTRVISGDPPGLPAILRAEACETGRQWQWDGVRFQLWQWSAANDSNQRSCVLQIEANGERLLLTGDIDIAAE
RVLLDSPLAVPTHWLQAPHHGSRSSSSMALLRALKPHSVLISRGQGNSFGHPHPLVLARYRQQGLRIYDSAQHGAIQLRL
GSFQAPWLMRQQRRFWR

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=945369 V9L13_RS12895 WP_338802699.1 2875972..2878185(-) (comA) [Pseudomonas sp. RSB 5.4]
ATGCGCACAGGGATGATGGCGCTGGCAGCCGGTTTGCTGGTTGCAGGTTTTTTGCCGGTTTTACCGCCGGTCGGGTTGAT
GATGTTGTTGCCCATGGTGGGGCTGATGTTGCTGCCGTTTCGCAGCTATCCCTTGGCATTTCTGCTGTTCGGTTTCACTT
GGGCTTGTGTCAGTGCGCAGTGGGCGCTGGATGAGCGATTACCGGCGCAACTTGACGGTGAAACCCGCTGGGTCGAGGGG
CGTGTGGTCGGCTTGCCGCAAACCAGCGAGGGCGTGGTGCGTTTCGAGTTGGCCGATGCCCGCTCGCGCCACGACAGGCT
GCCGTCGTTGATGCGTCTGGCGTGGTACGCCGGGCCAGCGGTCAAAAGTGGCGAGCGCTGGCGTCTGGCAGTGAAACTCA
AGCGCCCCGGTGGTTTGCTCAATCCCGATGCCTTCGATTACGAAGCCTGGCTGCTGGCGCAACGCATCGGCGCGACGGGT
ACGATCAAGGATGGTCAGCGCCTTGCCGAGGCAAACTGGGCGTGGCGCGACGGCATTCGCCAGCGCTTGCTGGCAGTCGA
TGCACAAGGGCGGGCTGGTGCATTGGCGGCGCTGGTGCTGGGTGATGGCTCCGGGCTCAGTCGCGAGGACTGGCAGATCC
TGCAGGACACCGGCACCGTGCATCTGCTGGTGATTTCCGGCCAACACATCGGGATGTTGGCGGCGGTGATGTATCTGCTG
GTCGCCGGGCTGGCGCGCTACGGATGTTGGCCGCTGCGCAGGCCTTGGCTGCCTTGGGCCTGCGGACTGGCGTTTGCCGC
TGCGCTCGGCTACGGCTTGCTTGCCGGGTTTGATGTGCCGGTGCAACGGGCCTGTGTGATGGTCGGGCTGGTACTGCTGT
GGCGTCTGCGATTTCGCCATCTCGGCGCGTGGTGGCCGCTGTTACTGGCGTTGAATGCGGTGCTGTTGCTCGACCCGTTG
GCCAGTTTGCGTCCCGGCTTATGGTTGTCGTTCGCCGCTGTGGGGATTTTGATTATCACCTTCGGTGGTCGACTCGGTGC
GTGGAAATGGTGGCAGACCTGGACGCGGGCGCAATGGCTGATCGCGTTGGGTCTGTGCCCGGTGCTGCTGGCGCTGAATC
TGCCGATCAGCCTCAGCGGACCACTGGCGAATGTGCTGGCGGTGCCGTGGGTCAGCCTGTTGGTGCTGCCACCGGCGCTG
CTCGGCACGCTGTTGTTGCCGGTGCCTTATGTCGGTGCAGGGTTGTTGTGGCTGGCGGGTGGCTTGATCGACTGGCTGTT
TCGCGGCTTGTCGATGATTGCCGGGGCCTGGCCGGCGTGGATCTCGCCGTCGCTGCCGTGGTGGGCGTTGTTGCTCGGCA
GTCTCGGCGCCTTTTTGCTGCTGTTGCCGCGCGGAGTGCCATTACGACCGCTGGGCTGGCCGTTGCTGCTGATTCTGGTG
GCGCCGCCTCGCGAGCGGGTGGCCGAGGGGCTGGCCGATATCTGGCAGCTCGATGTCGGTCAGGGCCTGGCGATCCTGAT
CCGTACGCGTCATCACACGTTGCTCTATGACGCCGGTCCACGCTTCGGCGATTTCGATCTGGGTGAGCGAGTAGTGCTGC
CGACGCTGCACAAACTCGGGGTCGAGCGCATCGATCTGATGCTGCTCAGTCATGCCGACGCCGACCATGCCGGTGGTGCG
CTGGCGGTATCGCGGGGCTTGAAAGTGACTCGGGTGATCAGCGGCGATCCGCCGGGCCTGCCCGCCATACTGCGGGCCGA
GGCCTGCGAAACCGGGCGGCAGTGGCAGTGGGACGGGGTCCGTTTTCAGCTGTGGCAATGGTCGGCCGCCAATGACAGCA
ATCAGCGCTCCTGCGTGTTGCAGATCGAGGCCAATGGCGAGCGTCTGCTGCTGACCGGCGATATCGACATCGCCGCCGAA
CGGGTTCTGCTCGACAGTCCGCTGGCCGTGCCGACGCACTGGCTGCAGGCGCCGCACCATGGCAGTCGCAGTTCCTCCTC
GATGGCGCTGCTTCGGGCATTGAAGCCGCATTCGGTGCTGATCTCCCGGGGGCAGGGCAATTCGTTCGGTCATCCGCACC
CGCTGGTGCTCGCGCGTTATCGTCAGCAAGGGCTGCGCATCTACGACAGCGCGCAGCACGGCGCCATTCAGCTGCGCCTG
GGCAGCTTTCAGGCGCCGTGGCTGATGCGTCAACAACGGCGTTTCTGGCGTTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-677)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.674

97.422

0.611
  comA Ralstonia pseudosolanacearum GMI1000

34.61

100

0.368