Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   SGN16_RS25055 Genome accession   NZ_CP146985
Coordinates   5659011..5660600 (+) Length   529 a.a.
NCBI ID   WP_335945963.1    Uniprot ID   -
Organism   Pseudomonas sp. G166     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5654011..5665600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGN16_RS25035 pgeF 5655810..5656535 (-) 726 WP_335945962.1 peptidoglycan editing factor PgeF -
  SGN16_RS25040 rluD 5656532..5657494 (-) 963 WP_003205696.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  SGN16_RS25045 - 5657646..5658662 (+) 1017 WP_210641005.1 outer membrane protein assembly factor BamD -
  SGN16_RS25050 - 5658788..5659021 (+) 234 WP_135847227.1 PP0621 family protein -
  SGN16_RS25055 pilS 5659011..5660600 (+) 1590 WP_335945963.1 ATP-binding protein Regulator
  SGN16_RS25060 pilR 5660597..5661943 (+) 1347 WP_335945964.1 sigma-54 dependent transcriptional regulator Regulator
  SGN16_RS25065 - 5662029..5662394 (-) 366 WP_210641011.1 DUF6124 family protein -
  SGN16_RS25070 thiO 5663676..5664776 (-) 1101 WP_335945965.1 glycine oxidase ThiO -
  SGN16_RS25075 - 5664832..5665233 (-) 402 WP_210641014.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58844.68 Da        Isoelectric Point: 7.1690

>NTDB_id=945351 SGN16_RS25055 WP_335945963.1 5659011..5660600(+) (pilS) [Pseudomonas sp. G166]
MIAEASSPRVKQAQRLLRLYHLYRLSIGITLVLLISSKLDNRLLEFANDDLLRSGSWLYLVLNILLVVFLENTRRPARLF
GLALTDVLLLSWLFFAAGGVPSAIGNLLIVSVAIGNTLLRGRVGLLIAAVATIGIVGSTFFLGLSDSNRPSSYLQAGTLG
ALCFAAALLVQGLTRRLEASETLAEQRASEVIGLEALNALILQRMRTGILVLDRERRVQLANESALNLLDMHDLVGQRID
DYCTALVERLQLWLNNPSLRPPSLTVAGTGLTLQPSFIALGHHDQQQILVFLEDLAQVAQQAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNDADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTTPQRLDLRAWLEQFVRQARENAAEH
QQLHLSIDPGDYTTLMDPDQLTQVLDNLLRNAWRHSAMAHEQAEAWLKLFIDPHSQLSTLDIIDNGPGVTPEQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=945351 SGN16_RS25055 WP_335945963.1 5659011..5660600(+) (pilS) [Pseudomonas sp. G166]
GTGATCGCTGAGGCCTCGAGCCCCCGCGTCAAACAGGCGCAGCGCCTGCTGCGCCTCTATCACCTGTATCGCCTGAGCAT
CGGCATCACCCTGGTGCTGTTGATCTCCAGCAAACTGGACAATCGCCTGCTGGAGTTCGCCAACGACGACCTGCTGCGCA
GCGGTAGCTGGTTGTACCTGGTGCTGAACATCCTGCTGGTGGTGTTCCTTGAGAACACTCGCCGCCCTGCCCGACTGTTC
GGCCTGGCACTCACCGACGTACTACTGCTTTCGTGGCTGTTCTTCGCCGCAGGCGGTGTGCCCAGTGCCATCGGCAACCT
GCTCATCGTCTCGGTAGCCATCGGCAATACGCTATTGCGAGGCCGGGTCGGCCTGTTGATCGCCGCTGTCGCCACGATCG
GTATCGTCGGGTCGACGTTCTTCCTCGGCCTGAGCGACTCAAACCGTCCCAGCAGCTATCTGCAAGCTGGCACCCTGGGA
GCACTGTGTTTTGCCGCCGCCCTGCTGGTACAAGGCCTGACCCGGCGACTGGAAGCCAGTGAAACCCTGGCCGAGCAACG
GGCCAGCGAAGTGATCGGCCTCGAAGCGCTCAATGCACTGATCCTGCAACGCATGCGCACCGGCATCCTGGTCCTCGACC
GCGAGCGGCGCGTGCAATTGGCCAACGAAAGCGCTTTGAACCTGCTAGACATGCATGACCTGGTCGGCCAGCGGATCGAT
GACTATTGCACCGCCCTGGTCGAACGCCTGCAATTGTGGTTGAACAACCCCAGCCTGCGCCCACCCAGCCTGACCGTGGC
TGGCACAGGCCTGACCCTGCAACCGAGCTTCATCGCCCTGGGGCATCACGATCAGCAGCAGATCCTGGTATTCCTTGAAG
ACCTGGCCCAGGTTGCCCAGCAGGCCCAGCAACTGAAACTCGCCTCCCTCGGGCGCCTCACCGCGGGCATCGCCCATGAA
ATCCGCAACCCCTTGGGGGCGATCAGCCATGCAGCGCAATTGCTGCGCGAATCCGAGGAACTGAACGACGCGGATCGACG
TCTGACGCAGATTATTCAAGATCACTCCCAACGAATGAATCGCGTCATTGAAAACGTCTTGCAACTGTCCCGCCGCCAGC
AGACCACGCCGCAACGCCTGGACCTACGGGCCTGGCTCGAGCAGTTTGTCCGTCAGGCCCGCGAAAACGCTGCCGAGCAC
CAGCAGTTGCACTTGAGCATCGACCCAGGCGACTACACCACGCTGATGGACCCCGACCAACTCACCCAAGTGCTCGACAA
CCTGCTGCGCAACGCCTGGCGCCACAGTGCAATGGCCCATGAACAGGCCGAGGCCTGGCTGAAACTGTTTATCGATCCCC
ACAGCCAGCTGTCCACCCTGGACATCATCGATAACGGTCCTGGTGTGACGCCAGAGCAACAGGCGCATCTGTTCGAACCC
TTCTTTACCACCAGCAGCCAGGGAACCGGCCTTGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACTTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.811

97.921

0.595