Detailed information NTG0945352

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: SGN16_RS25060
• Genome accession: NZ_CP146985
• Coordinates: 5660597..5661943 (+)
• Length: 448 a.a.
• NCBI ID: WP_335945964.1
• Uniprot ID: -
• Organism: Pseudomonas sp. G166
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5655597..5666943

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SGN16_RS25035	pgeF	5655810..5656535 (-)	726	WP_335945962.1	peptidoglycan editing factor PgeF	-
SGN16_RS25040	rluD	5656532..5657494 (-)	963	WP_003205696.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
SGN16_RS25045	-	5657646..5658662 (+)	1017	WP_210641005.1	outer membrane protein assembly factor BamD	-
SGN16_RS25050	-	5658788..5659021 (+)	234	WP_135847227.1	PP0621 family protein	-
SGN16_RS25055	pilS	5659011..5660600 (+)	1590	WP_335945963.1	ATP-binding protein	Regulator
SGN16_RS25060	pilR	5660597..5661943 (+)	1347	WP_335945964.1	sigma-54 dependent transcriptional regulator	Regulator
SGN16_RS25065	-	5662029..5662394 (-)	366	WP_210641011.1	DUF6124 family protein	-
SGN16_RS25070	thiO	5663676..5664776 (-)	1101	WP_335945965.1	glycine oxidase ThiO	-
SGN16_RS25075	-	5664832..5665233 (-)	402	WP_210641014.1	type IV pilin protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 50088.50 Da
• Isoelectric Point: 5.7751

>NTDB_id=945352 SGN16_RS25060 WP_335945964.1 5660597..5661943(+) (pilR) [Pseudomonas sp. G166]
MNIRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQALLTDEAFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPPVATPVATIERCLLGDSPPMRSVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRSSQGFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDGEVAAGRFRQDLYYRLNVIELRVPPLRERREDIEPLA
NHMLQRLAANTGSPPARLHPQALDALRNYRFPGNVRELENMLERAYTLCEQQQIEAVDLRLAEGSSASEAGNPDLMQVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=945352 SGN16_RS25060 WP_335945964.1 5660597..5661943(+) (pilR) [Pseudomonas sp. G166]
TTGAATATTCGCTCACGGCAACGAATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATTACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTTGCCGAGGCCCAAGCCCTGCTGACGGACGAAGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAACATATCCAGCAACGTTACCCCCAACTCCCC
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGGGCCTTCGACTTCCTGACCAA
ACCGGTCGACCTGGGCCGGCTGCGAGAACTGGTCACCAGCGCCTTGCGCCTACCGCCGGTCGCCACGCCGGTCGCCACCA
TCGAGCGCTGCCTGCTGGGCGACTCTCCACCGATGCGCAGCGTGCGCAAACAGATCGAAAAGCTCGCCCGCAGCCAGGCA
CCGGTGTACATCAGCGGCGAGTCAGGCTGCGGCAAGGAACTGGTCGCCCGGCTGATCCACGAACAAGGCCCCCGCTCCAG
CCAGGGGTTTGTGCCAGTCAACTGCGGGGCAATTCCCAGCGAGCTGATGGAAAGCGAGTTTTTCGGCCATCGAAAAGGCA
GCTTCAGCGGCGCCATCGAAGACAAACCCGGGCTGTTCCAGGCCGCCCACGGCGGAACGCTGTTCCTCGATGAAGTGGCC
GATCTGCCCCTGGCGATGCAAGTCAAACTGTTGCGAGCGATCCAGGAAAAGGCCGTACGCGCCGTGGGCGGCCAGCAGGA
AGAAGTGGTGGATGTACGCATCCTCTGCGCCACCCACAAGGACCTGGACGGCGAAGTGGCCGCCGGGCGCTTTCGCCAGG
ACCTGTACTATCGGCTGAACGTCATCGAACTGCGGGTCCCGCCGTTGCGTGAGCGCCGTGAAGATATCGAGCCGCTGGCC
AACCACATGCTCCAGCGCCTGGCAGCCAACACCGGCAGCCCACCGGCCAGGTTGCATCCCCAAGCGTTGGACGCCCTCAG
GAATTACCGCTTCCCGGGCAACGTGCGCGAACTGGAAAACATGCTCGAACGTGCCTACACCCTTTGCGAACAGCAACAGA
TCGAAGCCGTCGACCTGCGCCTGGCCGAGGGCAGTAGTGCTAGCGAGGCGGGCAATCCCGATTTGATGCAGGTCGACAAC
CTGGAGGATTACCTGGAAGACGTCGAACGCAAGCTCATCCTCCAGGCCCTGGAGGAAACTCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGTTGGGGTTGGATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

• Response regulator receiver domain (Response_reg) (9-118)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.505	99.107	0.788
pilR	Acinetobacter baumannii strain A118	49.673	100	0.509