Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpE   Type   Regulator
Locus tag   ACFXAC_RS06705 Genome accession   NZ_CP170720
Coordinates   1305084..1307180 (-) Length   698 a.a.
NCBI ID   WP_053573379.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5006     
Function   repress competence development (at the early growth phase) (predicted from homology)   
Competence regulation

Genomic Context

Location: 1300084..1312180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAC_RS06680 (ACFXAC_06680) - 1300672..1300932 (+) 261 WP_003154690.1 aspartyl-phosphate phosphatase Spo0E family protein -
  ACFXAC_RS06685 (ACFXAC_06685) - 1301143..1302660 (-) 1518 WP_046559543.1 ATP-binding protein -
  ACFXAC_RS06690 (ACFXAC_06690) - 1302859..1303305 (+) 447 WP_015417342.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACFXAC_RS06695 (ACFXAC_06695) motB 1303342..1304127 (-) 786 WP_003154685.1 flagellar motor protein MotB -
  ACFXAC_RS06700 (ACFXAC_06700) motA 1304099..1304914 (-) 816 WP_007408461.1 flagellar motor stator protein MotA -
  ACFXAC_RS06705 (ACFXAC_06705) clpE 1305084..1307180 (-) 2097 WP_053573379.1 ATP-dependent protease ATP-binding subunit ClpE Regulator
  ACFXAC_RS06710 (ACFXAC_06710) - 1307582..1308619 (+) 1038 WP_033574626.1 membrane protein -
  ACFXAC_RS06715 (ACFXAC_06715) - 1308717..1309838 (+) 1122 WP_053573380.1 hypothetical protein -
  ACFXAC_RS06720 (ACFXAC_06720) queC 1310088..1310747 (+) 660 WP_003154679.1 7-cyano-7-deazaguanine synthase QueC -
  ACFXAC_RS06725 (ACFXAC_06725) queD 1310748..1311191 (+) 444 WP_007408455.1 6-carboxytetrahydropterin synthase QueD -
  ACFXAC_RS06730 (ACFXAC_06730) queE 1311184..1311915 (+) 732 WP_015239741.1 7-carboxy-7-deazaguanine synthase QueE -

Sequence

Protein


Download         Length: 698 a.a.        Molecular weight: 77758.80 Da        Isoelectric Point: 5.4325

>NTDB_id=945321 ACFXAC_RS06705 WP_053573379.1 1305084..1307180(-) (clpE) [Bacillus amyloliquefaciens strain JP5006]
MRCQHCQKNEATIRLNMQVNSIQKQFVLCETCYTELTRKPSMSMGPQSFGFPFEQGFAPNQNKQQAGSEKGLLDELAQNV
TNGAKAGLIDPVIGRDHEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIAEGDVPNKLKNKELFLLDVASLVAN
TGIRGQFEERMKQLMNELKERKNVILFIDEIHLLVGAGSAEGSMDAGNILKPALARGELQVIGATTLKEYRQIEKDAALE
RRFQPVMVHEPTIEQAISILEGIKDKYEKYHGVTFSNEAINACVTLSSRYIQDRHLPDKAIDLLDEAGSKANLELDTVNE
EDAAERLKAIDAEKTKALHEENYELAAKLRDEEAALEKQLAHETPASSPEIGAEHIQAIIEQKTGIPVGKLQADEQVKMK
ELEEHLHQRVIGQEKAVKKVAKAVRRSRAGLKSKNRPVGSFLFVGPTGVGKTELSKTLADELFGTKDSIIRLDMSEYMEK
HAVSKIIGSPPGYVGHDEAGQLTEKVRRNPYSIVLLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVLIMTSNA
GTGEKQVKVGFQSEESVLEEQTLIDSLSAFFKPEFLNRFDSIIEFQSLKKEHLVKIVSLLLTELEDTLKERGISLSVTDE
AKEKIAEIGYHPAFGARPLRRTIQELIEDEMTDLLLDNNEIKAFHVVMEEDGIKVRAQ

Nucleotide


Download         Length: 2097 bp        

>NTDB_id=945321 ACFXAC_RS06705 WP_053573379.1 1305084..1307180(-) (clpE) [Bacillus amyloliquefaciens strain JP5006]
ATGCGTTGTCAACATTGTCAGAAAAACGAGGCGACGATTCGCCTGAACATGCAAGTCAATTCCATTCAAAAACAATTCGT
TTTATGTGAAACATGTTATACAGAATTAACCCGAAAACCGTCTATGAGCATGGGGCCGCAATCATTCGGATTCCCGTTTG
AGCAAGGTTTCGCACCCAATCAAAATAAACAGCAGGCCGGCTCTGAAAAAGGCCTGCTCGACGAGCTCGCTCAAAACGTC
ACAAACGGCGCAAAAGCAGGTCTGATTGATCCTGTGATCGGCCGCGATCATGAAGTGGCGCGCGTAATTGAAATTTTGAA
CCGCCGGAATAAAAACAATCCGGTGCTGATCGGTGAACCGGGCGTCGGTAAAACGGCTATTGCAGAAGGCCTCGCGCTTA
AAATCGCTGAAGGCGATGTGCCGAACAAATTGAAAAACAAAGAGCTTTTCCTGCTTGACGTCGCTTCTCTCGTCGCCAAT
ACAGGGATCAGAGGCCAGTTTGAAGAAAGAATGAAACAATTAATGAACGAATTAAAAGAACGGAAAAACGTCATCTTGTT
CATTGACGAGATTCACCTTCTTGTAGGCGCCGGCTCTGCCGAGGGATCAATGGATGCCGGGAACATCCTGAAACCGGCGC
TTGCCAGAGGCGAGCTGCAGGTCATCGGGGCGACAACGCTGAAAGAGTACCGCCAGATTGAAAAAGATGCGGCGCTTGAA
AGACGCTTCCAGCCTGTCATGGTTCACGAGCCTACAATAGAACAAGCCATCAGCATTCTGGAAGGCATTAAAGATAAATA
TGAGAAATACCACGGCGTCACATTCAGCAATGAAGCGATAAACGCCTGTGTTACGCTTTCATCCCGTTACATTCAGGACC
GCCACCTGCCGGATAAAGCGATCGACTTATTAGATGAAGCCGGCTCTAAGGCGAACCTGGAGCTTGATACCGTAAATGAA
GAAGATGCGGCTGAGAGACTCAAAGCAATTGACGCGGAGAAAACAAAAGCGCTTCATGAAGAAAATTATGAGCTTGCCGC
GAAACTGCGTGATGAAGAAGCGGCGTTGGAAAAGCAGCTGGCGCATGAAACACCGGCCTCTTCACCTGAAATCGGGGCGG
AGCATATTCAAGCCATTATTGAACAGAAAACAGGCATTCCGGTCGGAAAACTCCAGGCTGATGAACAAGTTAAAATGAAG
GAACTTGAAGAGCATCTTCATCAGCGCGTCATCGGTCAGGAAAAAGCCGTGAAAAAAGTGGCGAAAGCGGTCAGACGAAG
CCGCGCCGGCTTAAAATCCAAAAACAGACCTGTCGGCTCCTTCCTCTTTGTCGGACCGACCGGAGTCGGAAAAACCGAGT
TATCAAAGACACTCGCAGATGAACTGTTCGGTACAAAAGATTCCATTATCCGTCTCGATATGAGTGAATACATGGAAAAA
CACGCCGTATCAAAAATCATCGGTTCACCGCCGGGATATGTCGGACACGATGAAGCCGGTCAATTAACGGAAAAAGTGCG
CCGCAATCCGTACAGCATCGTGCTGCTCGATGAGATTGAAAAAGCCCACCCTGATGTCCAGCATATGTTTCTGCAGATTA
TGGAGGACGGCCGTCTGACAGACAGCCAGGGCAGAACGGTCAGCTTCAAAGATACCGTTTTGATTATGACAAGCAACGCT
GGAACCGGCGAAAAACAGGTGAAAGTCGGATTCCAATCTGAAGAGAGCGTCCTGGAAGAACAAACGCTGATTGATTCACT
GAGCGCGTTCTTCAAACCGGAGTTTTTAAACCGGTTTGACAGCATCATTGAATTCCAATCCCTGAAAAAAGAACATCTCG
TGAAAATCGTCAGCCTGCTTCTCACAGAGCTTGAAGACACATTAAAAGAGCGCGGCATCAGCCTGAGCGTAACGGACGAA
GCGAAAGAAAAAATCGCTGAAATCGGCTACCACCCAGCTTTCGGAGCACGCCCGCTCAGAAGAACCATCCAAGAATTGAT
CGAGGACGAAATGACAGATCTCTTATTGGATAACAACGAAATAAAAGCCTTCCATGTCGTAATGGAAGAGGACGGCATCA
AAGTCCGGGCACAATAA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(115-246)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(608-679)

AAA domain (Cdc48 subfamily) (AAA_2)

(436-602)

AAA lid domain (AAA_lid_9)

(252-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus mutans UA159

57.007

100

0.6
  clpE Streptococcus pneumoniae TIGR4

56.54

100

0.595
  clpE Streptococcus pneumoniae Rx1

56.54

100

0.595
  clpE Streptococcus pneumoniae D39

56.54

100

0.595
  clpE Streptococcus pneumoniae R6

56.54

100

0.595
  clpC Lactococcus lactis subsp. cremoris KW2

56.54

100

0.595
  clpC Bacillus subtilis subsp. subtilis str. 168

54.232

91.404

0.496
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

46.311

91.261

0.423
  clpC Streptococcus thermophilus LMD-9

44.154

93.123

0.411
  clpC Streptococcus pneumoniae Rx1

45.88

88.682

0.407
  clpC Streptococcus pneumoniae D39

45.88

88.682

0.407
  clpC Streptococcus pneumoniae TIGR4

45.88

88.682

0.407
  clpC Streptococcus thermophilus LMG 18311

43.538

93.123

0.405
  clpC Streptococcus mutans UA159

44.246

88.395

0.391
  clpA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

41.584

86.819

0.361