Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   WAA16_RS05440 Genome accession   NZ_CP146984
Coordinates   1116030..1116227 (+) Length   65 a.a.
NCBI ID   WP_003211983.1    Uniprot ID   -
Organism   Bacillus pumilus strain S9     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1111030..1121227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAA16_RS05410 (WAA16_05410) - 1111440..1111619 (+) 180 WP_034663316.1 YjzC family protein -
  WAA16_RS05415 (WAA16_05415) - 1111788..1113053 (+) 1266 WP_338712404.1 MFS transporter -
  WAA16_RS05420 (WAA16_05420) - 1113172..1113366 (-) 195 WP_003211779.1 YjzD family protein -
  WAA16_RS05425 (WAA16_05425) - 1113578..1114318 (+) 741 WP_106036690.1 hypothetical protein -
  WAA16_RS05430 (WAA16_05430) - 1114394..1114966 (+) 573 WP_106036691.1 nad binding enzyme -
  WAA16_RS05435 (WAA16_05435) med 1115057..1116019 (+) 963 WP_034663299.1 BMP family ABC transporter substrate-binding protein Regulator
  WAA16_RS05440 (WAA16_05440) comZ 1116030..1116227 (+) 198 WP_003211983.1 ComZ family protein Regulator
  WAA16_RS05445 (WAA16_05445) - 1116237..1116470 (-) 234 WP_034663296.1 hypothetical protein -
  WAA16_RS05450 (WAA16_05450) - 1116640..1117578 (+) 939 WP_012009552.1 beta-ketoacyl-ACP synthase III -
  WAA16_RS05455 (WAA16_05455) fabF 1117600..1118841 (+) 1242 WP_106036692.1 beta-ketoacyl-ACP synthase II -
  WAA16_RS05460 (WAA16_05460) - 1118919..1119713 (+) 795 WP_034663290.1 DUF2268 domain-containing protein -
  WAA16_RS05465 (WAA16_05465) - 1119882..1120862 (+) 981 WP_338712406.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 65 a.a.        Molecular weight: 7391.42 Da        Isoelectric Point: 4.1652

>NTDB_id=945287 WAA16_RS05440 WP_003211983.1 1116030..1116227(+) (comZ) [Bacillus pumilus strain S9]
MQHEKSMEFLQIAMKYFPQAKEELDKAGIQLEPEALQPLLSLFTSVMQEAYELGKADAESEKATE

Nucleotide


Download         Length: 198 bp        

>NTDB_id=945287 WAA16_RS05440 WP_003211983.1 1116030..1116227(+) (comZ) [Bacillus pumilus strain S9]
ATGCAGCACGAAAAATCGATGGAGTTTTTACAAATTGCCATGAAGTATTTTCCGCAGGCAAAAGAAGAATTAGATAAAGC
GGGTATTCAGCTTGAGCCCGAAGCTCTTCAGCCGCTTTTATCATTGTTTACATCTGTCATGCAAGAGGCATATGAGCTTG
GGAAAGCAGATGCAGAATCAGAAAAAGCCACAGAATAG

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

72.131

93.846

0.677