Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   WAX88_RS11300 Genome accession   NZ_CP146973
Coordinates   2483723..2484319 (+) Length   198 a.a.
NCBI ID   WP_005297642.1    Uniprot ID   A0A2T3QMJ2
Organism   Photobacterium damselae subsp. damselae strain WMD-P3     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2478723..2489319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAX88_RS11275 (WAX88_11275) panC 2479425..2480315 (+) 891 WP_005297652.1 pantoate--beta-alanine ligase -
  WAX88_RS11280 (WAX88_11280) - 2480431..2481201 (-) 771 WP_065171758.1 ABC transporter permease -
  WAX88_RS11285 (WAX88_11285) - 2481198..2482121 (-) 924 WP_106142067.1 ABC transporter ATP-binding protein -
  WAX88_RS11290 (WAX88_11290) can 2482220..2482891 (+) 672 WP_005297646.1 carbonate dehydratase -
  WAX88_RS11295 (WAX88_11295) hpt 2482966..2483502 (-) 537 WP_005297644.1 hypoxanthine phosphoribosyltransferase -
  WAX88_RS11300 (WAX88_11300) opaR 2483723..2484319 (+) 597 WP_005297642.1 TetR/AcrR family transcriptional regulator Regulator
  WAX88_RS11305 (WAX88_11305) - 2484393..2485430 (-) 1038 WP_036764789.1 ABC transporter ATP-binding protein -
  WAX88_RS11310 (WAX88_11310) - 2485433..2487058 (-) 1626 WP_005297638.1 iron ABC transporter permease -
  WAX88_RS11315 (WAX88_11315) - 2487214..2488227 (-) 1014 WP_005297636.1 Fe(3+) ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22812.08 Da        Isoelectric Point: 7.1177

>NTDB_id=945248 WAX88_RS11300 WP_005297642.1 2483723..2484319(+) (opaR) [Photobacterium damselae subsp. damselae strain WMD-P3]
MDMVIKRTRTRLSPEKRREQLLNSALDVFARRGIGRGGHADIAEMANVSVATVFNYFPTREDLVEQVLIHVESRFNKLLT
HSLNDEMPTAKAKLTNLTDCLIKAVIEQHDWLKVWFEWSTSVRDDIWPLFIKTNKNNLQKLTSVFEQGLTAGEFSRSQSA
SDLAHMFHGTCYVLYLQTHLTLDPEIMQRQADSYLQSL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=945248 WAX88_RS11300 WP_005297642.1 2483723..2484319(+) (opaR) [Photobacterium damselae subsp. damselae strain WMD-P3]
ATGGACATGGTGATTAAGCGTACTCGTACTCGCTTATCTCCAGAAAAACGTCGAGAGCAGCTACTCAATAGCGCACTAGA
TGTTTTTGCTCGTCGTGGTATTGGCCGAGGGGGCCACGCAGATATCGCGGAAATGGCAAATGTCTCTGTTGCGACCGTTT
TCAATTATTTTCCAACTCGCGAAGATTTAGTAGAACAGGTATTAATTCACGTTGAATCTCGTTTCAATAAACTACTGACA
CACTCTCTCAACGATGAAATGCCAACAGCAAAAGCCAAACTGACTAACCTTACCGATTGCTTAATTAAAGCTGTTATAGA
GCAGCACGATTGGCTAAAAGTCTGGTTTGAATGGAGTACATCAGTACGTGATGATATTTGGCCACTGTTTATTAAAACCA
ATAAAAATAACTTACAAAAGTTAACTTCGGTTTTTGAACAGGGATTAACGGCTGGAGAATTTAGCCGCTCTCAATCTGCA
TCAGATTTAGCGCATATGTTTCACGGTACCTGTTATGTGCTGTACTTACAAACGCACCTAACCTTAGACCCTGAAATTAT
GCAGCGACAAGCTGATAGCTATTTACAGAGCCTGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(21-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T3QMJ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

48.485

100

0.485
  hapR Vibrio cholerae C6706

48.241

100

0.485
  hapR Vibrio cholerae strain A1552

48.241

100

0.485