Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACFW98_RS07210 Genome accession   NZ_CP170719
Coordinates   1544796..1546568 (-) Length   590 a.a.
NCBI ID   WP_015417948.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5008     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1539796..1551568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW98_RS07190 (ACFW98_07190) sdhA 1540008..1541768 (-) 1761 WP_003152573.1 succinate dehydrogenase flavoprotein subunit -
  ACFW98_RS07195 (ACFW98_07195) sdhC 1541802..1542410 (-) 609 WP_003152571.1 succinate dehydrogenase cytochrome B558 -
  ACFW98_RS07200 (ACFW98_07200) - 1542707..1543153 (+) 447 WP_007612940.1 YslB family protein -
  ACFW98_RS07205 (ACFW98_07205) - 1543200..1544429 (-) 1230 WP_015417947.1 aspartate kinase -
  ACFW98_RS07210 (ACFW98_07210) uvrC 1544796..1546568 (-) 1773 WP_015417948.1 excinuclease ABC subunit UvrC Machinery gene
  ACFW98_RS07215 (ACFW98_07215) trxA 1546711..1547025 (-) 315 WP_020956164.1 thioredoxin -
  ACFW98_RS07220 (ACFW98_07220) - 1547179..1548669 (-) 1491 WP_015417949.1 alpha-N-arabinofuranosidase -
  ACFW98_RS07225 (ACFW98_07225) - 1548883..1549860 (-) 978 WP_015417950.1 electron transfer flavoprotein subunit alpha/FixB family protein -
  ACFW98_RS07230 (ACFW98_07230) - 1549892..1550665 (-) 774 WP_254003344.1 electron transfer flavoprotein subunit beta/FixA family protein -
  ACFW98_RS07235 (ACFW98_07235) - 1550679..1551458 (-) 780 WP_015417952.1 enoyl-CoA hydratase -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 68328.23 Da        Isoelectric Point: 9.6173

>NTDB_id=945179 ACFW98_RS07210 WP_015417948.1 1544796..1546568(-) (uvrC) [Bacillus amyloliquefaciens strain JP5008]
MNKQLKEKLALLPDQPGCYLMKDRQKTVIYVGKAKVLKNRVRSYFTGSHDAKTQRLVTEIEDFEYIVTSSNLEALILEMN
LIKKYDPKYNVMLKDDKTYPFIKITHERHPRLIVTRNVKKDKGRYFGPYPNVQAARETKKLLDRLYPLRKCSKLPDRVCL
YYHLGQCLAPCVKDISEETNREIVEDITRFLKGGHNEIKKELEAKMAEAAEKLEFERAKEFRDQLAHIESTMEKQKMTMN
DLLDRDVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPMYQEADEEFLTFIGQFYSKNNHFLPKEILVPDSVDRDMITEL
LETAVHQPKKGPKKELLLLAHKNAKIALREKFSLIERDEERSIGAAERLGEALNIYTPHRIEAFDNSNIQGTNPVSAMIV
FIDGKPNKKEYRKYKIKTVTGPDDYGSMREVVRRRYTRVLRENLPLPDLIIIDGGKGQINAARDVLENELGLDVPVAGLA
KDDKHRTSNLLIGDPLEPVFLERNSQEFYLLQRIQDEVHRFAISFHRQIRGKSAFQSVLDDIPGIGEKRKKMLLKHFGSV
KKMKEASLDDIKKAGVPAAAAQLLFEKLKK

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=945179 ACFW98_RS07210 WP_015417948.1 1544796..1546568(-) (uvrC) [Bacillus amyloliquefaciens strain JP5008]
ATGAATAAACAACTGAAAGAAAAACTGGCCCTCCTTCCCGATCAGCCGGGCTGTTATTTAATGAAAGACCGTCAAAAAAC
AGTCATCTACGTGGGGAAAGCGAAAGTCTTGAAAAACAGGGTGCGATCTTATTTCACCGGTTCTCACGACGCAAAAACCC
AACGGCTTGTGACGGAGATTGAGGACTTTGAATATATCGTGACTTCCTCCAATCTTGAAGCGCTTATTTTGGAAATGAAT
CTGATTAAAAAATACGATCCGAAATACAATGTCATGCTGAAAGATGATAAAACCTATCCCTTTATTAAAATCACCCATGA
ACGCCATCCGCGGCTGATTGTCACTCGGAATGTCAAAAAAGACAAAGGACGCTATTTCGGCCCGTATCCGAATGTGCAGG
CGGCGCGGGAAACGAAAAAACTGCTGGACCGCCTTTACCCGCTCAGGAAATGCTCAAAGCTTCCGGACCGCGTCTGTCTC
TATTATCATCTCGGACAATGCCTTGCCCCATGTGTAAAGGATATATCTGAGGAGACAAACCGTGAGATTGTTGAAGACAT
TACCCGTTTTTTAAAGGGAGGGCATAACGAAATCAAAAAAGAGCTCGAAGCGAAAATGGCAGAAGCGGCGGAAAAGCTTG
AATTTGAACGGGCTAAAGAATTCCGCGACCAGCTTGCTCACATCGAATCGACGATGGAGAAGCAAAAAATGACCATGAAT
GACCTTCTGGACCGCGATGTGTTTGCATATGCCTACGATAAAGGCTGGATGTGCGTCCAAGTCTTTTTCATACGCCAAGG
AAAACTGATCGAACGTGACGTCAGCATGTTTCCGATGTATCAGGAAGCGGATGAAGAATTTCTGACCTTCATCGGCCAGT
TCTACTCTAAAAACAATCACTTTCTGCCTAAGGAAATTCTGGTGCCTGACAGCGTTGACAGGGACATGATCACCGAGCTG
TTGGAAACCGCCGTCCATCAGCCGAAAAAAGGCCCGAAAAAAGAGCTGCTTTTGCTTGCGCACAAAAATGCGAAAATCGC
CCTGCGGGAAAAATTCTCGTTAATCGAGCGGGATGAGGAACGGTCAATCGGTGCAGCCGAACGGCTCGGCGAAGCGCTGA
ATATTTATACGCCGCATCGGATTGAAGCGTTTGACAACTCCAATATTCAAGGCACAAACCCCGTATCGGCCATGATTGTC
TTTATTGACGGAAAACCGAATAAAAAGGAATACCGCAAATATAAAATTAAAACCGTAACAGGGCCGGATGATTACGGCTC
AATGAGGGAAGTCGTCAGAAGAAGGTACACGAGGGTGCTTCGCGAAAATCTTCCGCTGCCGGATTTAATCATCATTGACG
GCGGAAAAGGGCAGATTAACGCGGCGCGCGACGTGCTCGAGAATGAGCTCGGCCTTGATGTCCCGGTAGCGGGATTGGCG
AAAGATGATAAACACCGGACATCCAACCTTTTGATCGGCGACCCGCTTGAACCGGTGTTTCTGGAGCGAAACAGCCAAGA
GTTTTACCTGCTTCAGCGCATTCAGGACGAAGTTCACCGTTTTGCGATCAGCTTTCACAGACAGATCCGGGGAAAAAGCG
CCTTTCAATCCGTTCTGGATGATATCCCCGGAATCGGCGAAAAACGCAAAAAAATGCTCTTAAAACATTTCGGATCTGTC
AAAAAGATGAAGGAAGCAAGCCTTGACGATATCAAAAAAGCGGGTGTGCCGGCCGCGGCGGCCCAGCTGCTGTTTGAAAA
ATTAAAAAAATAG

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(16-90)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(373-523)

UvrB/uvrC motif (UVR)

(198-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

59.694

99.661

0.595
  uvrC Streptococcus pneumoniae R6

59.354

99.661

0.592
  uvrC Streptococcus pneumoniae D39

59.354

99.661

0.592