Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   WAX87_RS00380 Genome accession   NZ_CP146967
Coordinates   81204..82298 (+) Length   364 a.a.
NCBI ID   WP_106142309.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. damselae strain WMD-P1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 76204..87298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WAX87_RS00360 (WAX87_00360) rsmB 76969..78246 (-) 1278 WP_109375369.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  WAX87_RS00365 (WAX87_00365) fmt 78385..79329 (-) 945 WP_005302152.1 methionyl-tRNA formyltransferase -
  WAX87_RS00370 (WAX87_00370) def 79342..79854 (-) 513 WP_068945797.1 peptide deformylase -
  WAX87_RS00375 (WAX87_00375) - 80143..81201 (+) 1059 WP_109375368.1 LysM peptidoglycan-binding domain-containing protein -
  WAX87_RS00380 (WAX87_00380) dprA 81204..82298 (+) 1095 WP_106142309.1 DNA-processing protein DprA Machinery gene
  WAX87_RS00385 (WAX87_00385) - 82301..82774 (+) 474 WP_036764597.1 DUF494 family protein -
  WAX87_RS00390 (WAX87_00390) - 82885..83442 (+) 558 WP_005302142.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  WAX87_RS00395 (WAX87_00395) - 83510..84631 (-) 1122 WP_109375367.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  WAX87_RS00400 (WAX87_00400) purE 84634..85119 (-) 486 WP_109375366.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  WAX87_RS00405 (WAX87_00405) - 85312..85869 (+) 558 WP_044178827.1 L-threonylcarbamoyladenylate synthase -
  WAX87_RS00410 (WAX87_00410) hemF 85873..86784 (+) 912 WP_341495896.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 39165.19 Da        Isoelectric Point: 6.2787

>NTDB_id=945162 WAX87_RS00380 WP_106142309.1 81204..82298(+) (dprA) [Photobacterium damselae subsp. damselae strain WMD-P1]
MDDIHAWLKLVAVPGLGGHRISRLLQHAMPEQIMAMDESELRSIGLTLKQVAAIKHPDNKKIDLALNWQQRPHCHIIPLV
SPLYPPLLKEISSAPPLLFVKGDPSFLAQPQIAIIGSRSASIDGREIAADFAANIVAQNYVVTSGLALGIDSQAHQGALR
HGGATIAVLGSGLEQIYPACHKSLAASIVEQGALVSEFWPQEKPRAQFFPRRNRIISGLSVGVLVVEAAQKSGSLITANY
ALEQGREVFAIPGSIYNPASRGCNALIKSGAKLVESAQDIFEEVGALTECAINHQLSQALPETENEQLPFPELLATVGSE
VIPVDVLAERSQMPVHDVMTQLLELELLGLVTALPGGYIRTRRG

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=945162 WAX87_RS00380 WP_106142309.1 81204..82298(+) (dprA) [Photobacterium damselae subsp. damselae strain WMD-P1]
ATGGACGATATCCATGCTTGGCTGAAATTGGTGGCTGTTCCTGGACTCGGTGGCCACCGTATCAGTCGTTTATTACAACA
TGCAATGCCAGAGCAAATTATGGCAATGGATGAGTCTGAACTGCGAAGTATCGGGTTGACGCTAAAGCAGGTTGCCGCCA
TTAAGCATCCCGACAATAAGAAAATAGATTTGGCGCTAAATTGGCAGCAGCGTCCCCATTGTCACATTATTCCTTTAGTT
TCGCCCTTGTATCCACCTTTATTAAAGGAGATCAGCTCAGCACCTCCTTTGTTATTTGTTAAAGGTGATCCTTCTTTCTT
AGCCCAGCCTCAAATTGCCATTATTGGTAGTCGCTCAGCCAGTATTGATGGTCGAGAAATTGCCGCTGACTTTGCTGCAA
ATATTGTGGCGCAAAATTATGTGGTAACCAGTGGCTTAGCCTTGGGCATCGATAGTCAAGCTCATCAAGGAGCCCTACGT
CATGGCGGGGCAACTATTGCCGTTTTAGGTTCCGGGCTGGAGCAGATTTATCCCGCATGCCACAAATCGTTAGCTGCAAG
CATTGTTGAGCAGGGCGCTCTTGTCTCTGAGTTTTGGCCGCAAGAAAAACCACGAGCCCAATTTTTTCCACGTAGAAACC
GAATTATTAGCGGTTTATCTGTTGGAGTATTGGTTGTGGAAGCGGCTCAAAAAAGTGGATCATTAATTACGGCTAATTAT
GCTTTAGAGCAAGGCCGAGAGGTCTTTGCTATACCTGGTTCTATTTATAATCCCGCCAGCCGAGGTTGTAATGCATTGAT
AAAATCGGGTGCTAAACTTGTAGAAAGTGCTCAAGATATTTTCGAGGAGGTAGGAGCCCTAACAGAATGCGCAATTAATC
ACCAATTAAGCCAAGCTCTACCCGAGACAGAAAATGAACAATTGCCATTTCCTGAACTGTTGGCTACCGTAGGCAGCGAA
GTGATACCAGTCGATGTCTTAGCTGAGCGCAGCCAAATGCCAGTTCATGATGTCATGACGCAATTATTAGAATTAGAATT
GCTCGGATTGGTCACCGCATTACCCGGTGGTTATATCAGAACGAGGAGGGGCTAG

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(70-275)

DprA winged helix domain (DprA_WH)

(312-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

56.198

99.725

0.56
  dprA Vibrio cholerae strain A1552

51.715

100

0.538
  dprA Glaesserella parasuis strain SC1401

47.467

100

0.489
  dprA Legionella pneumophila strain ERS1305867

43.36

100

0.44
  dprA Haemophilus influenzae Rd KW20

46.334

93.681

0.434
  dprA Neisseria meningitidis strain C311

44.237

88.187

0.39
  dprA Neisseria meningitidis MC58

44.237

88.187

0.39
  dprA Acinetobacter baumannii strain A118

42.901

89.011

0.382
  dprA Neisseria gonorrhoeae MS11

43.26

87.637

0.379
  dprA Neisseria gonorrhoeae strain FA1090

42.633

87.637

0.374
  dprA Acinetobacter baylyi ADP1

45.27

81.319

0.368