Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   ACFW98_RS02410 Genome accession   NZ_CP170719
Coordinates   505484..507358 (+) Length   624 a.a.
NCBI ID   WP_032871514.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5008     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 500484..512358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW98_RS02395 (ACFW98_02395) ymcA 501536..501967 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  ACFW98_RS02400 (ACFW98_02400) cotE 502220..502765 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  ACFW98_RS02405 (ACFW98_02405) hexA 502883..505468 (+) 2586 WP_395097023.1 DNA mismatch repair protein MutS Machinery gene
  ACFW98_RS02410 (ACFW98_02410) hexB 505484..507358 (+) 1875 WP_032871514.1 DNA mismatch repair endonuclease MutL Machinery gene
  ACFW98_RS02415 (ACFW98_02415) - 507635..508075 (-) 441 WP_395096759.1 hypothetical protein -
  ACFW98_RS02420 (ACFW98_02420) - 508352..508504 (+) 153 WP_395096761.1 hypothetical protein -
  ACFW98_RS02425 (ACFW98_02425) - 509778..510455 (+) 678 WP_003154103.1 MBL fold metallo-hydrolase -
  ACFW98_RS02430 (ACFW98_02430) fabD 510770..511639 (+) 870 WP_015417505.1 ACP S-malonyltransferase -

Sequence

Protein


Download         Length: 624 a.a.        Molecular weight: 70194.41 Da        Isoelectric Point: 5.8551

>NTDB_id=945143 ACFW98_RS02410 WP_032871514.1 505484..507358(+) (hexB) [Bacillus amyloliquefaciens strain JP5008]
MAKVIQLSDELSNKIAAGEVVERPASVVKELVENAIDANSTVIEIDIEEAGLSSIRVLDNGEGMETDDCKRAFRRHATSK
IKDENDLFRVRTLGFRGEALPSIASVSHLEIKTSIGEGAGTHLILQGGNIISEQKSSSRKGTEIIVTNLFFNTPARLKYM
KTVHTELGNITDVVNRIALAHPEVSIRLRHQGKNLLQTNGNGDVRHVLAAIYGTAVAKKMIPLHVSSLDFEVKGYIALPE
ITRASRNYMSSVINGRYIKNFPLVKAVHEGYHTLLPIGRHPITFIEITMDPILVDVNVHPSKLEVRLSKETELHELIRDG
IKEVFQKQRLIPSAQLPKKSAPAPAKNEQQFMTFEESAPERKLPEKTPEPSYSPMKLSSVVKEPEPVIIEEEILPNEADH
DVPPELGMPEPEAPVSDTPEPEAVAEEIREERVPVMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGQVE
PEVQDMIVPLTFHYAANEALIIDQHQHELESVGVFLEAFGTNSYIVRCHPAWFPKGEEAELIEEIIQQVLDAKQIDIKKL
REEAAIMMSCKGSIKANRHLRNDEIKALLDDLRRTTDPFTCPHGRPIIIHHSTYEMEKMFKRVM

Nucleotide


Download         Length: 1875 bp        

>NTDB_id=945143 ACFW98_RS02410 WP_032871514.1 505484..507358(+) (hexB) [Bacillus amyloliquefaciens strain JP5008]
TTGGCAAAAGTCATCCAGCTGTCAGATGAACTCTCGAATAAAATAGCGGCCGGCGAGGTGGTCGAACGGCCTGCCTCAGT
CGTTAAAGAATTGGTGGAAAACGCCATCGACGCAAACAGCACAGTCATTGAAATCGACATAGAGGAAGCGGGGCTTTCGT
CGATTCGGGTGCTCGATAACGGCGAAGGGATGGAAACCGATGATTGCAAGCGGGCTTTCCGCCGCCACGCGACCAGTAAA
ATCAAAGATGAAAACGACCTGTTCCGGGTGAGAACACTCGGTTTCCGCGGAGAAGCTTTGCCAAGTATCGCGTCTGTTTC
TCATCTGGAAATCAAAACGAGCATCGGCGAGGGAGCGGGAACCCATCTCATTCTTCAGGGCGGGAATATCATTTCTGAAC
AGAAATCCTCCAGCAGAAAAGGAACGGAGATTATCGTTACCAACCTGTTTTTCAATACACCCGCCAGATTGAAATATATG
AAAACCGTGCATACGGAGCTCGGCAATATTACGGATGTCGTCAACCGGATCGCTCTTGCGCATCCGGAAGTATCGATCCG
TCTCCGCCATCAGGGGAAAAATCTGCTGCAGACAAACGGTAACGGGGACGTGCGCCATGTGCTGGCCGCAATTTACGGGA
CGGCGGTTGCGAAAAAAATGATACCGCTCCATGTCAGCTCGCTTGATTTTGAAGTCAAGGGCTACATTGCGCTTCCGGAA
ATCACGCGTGCATCCAGAAACTACATGTCATCTGTCATTAACGGAAGATACATTAAGAATTTCCCGCTTGTAAAAGCGGT
GCATGAGGGCTATCACACACTTCTGCCGATCGGCCGCCATCCGATTACGTTTATCGAAATTACGATGGACCCGATTTTGG
TCGATGTCAATGTCCATCCCTCGAAGCTTGAAGTCCGCCTCAGCAAAGAGACGGAGCTGCATGAGCTGATCCGTGACGGG
ATAAAGGAAGTGTTTCAAAAGCAGAGGCTGATTCCGAGCGCCCAGCTCCCGAAAAAATCCGCGCCGGCACCGGCCAAAAA
CGAACAGCAATTTATGACATTCGAGGAAAGCGCGCCTGAGCGGAAACTTCCTGAAAAAACGCCGGAGCCGTCTTACTCAC
CGATGAAGCTGAGTTCGGTCGTAAAAGAGCCTGAGCCGGTAATAATAGAAGAAGAGATCCTCCCGAATGAAGCGGATCAC
GATGTGCCGCCGGAGCTCGGCATGCCGGAACCGGAAGCGCCTGTTTCCGATACTCCGGAACCGGAAGCTGTCGCTGAAGA
AATACGGGAAGAAAGAGTTCCGGTGATGTATCCGATCGGCCAAATGCACGGGACATATATTTTAGCCCAAAACGAAAACG
GCTTGTATATCATTGACCAGCATGCGGCACAAGAACGGATTAAATACGAATATTTCCGGGAGAAAGTCGGGCAGGTTGAG
CCAGAAGTGCAGGATATGATCGTGCCGCTCACCTTTCATTATGCGGCAAATGAGGCGCTGATCATTGACCAGCATCAGCA
TGAGCTTGAAAGCGTCGGAGTATTTTTAGAAGCATTCGGCACGAACAGCTACATCGTCCGCTGCCATCCGGCCTGGTTTC
CAAAAGGGGAAGAAGCTGAACTGATTGAAGAAATCATTCAGCAGGTGCTTGACGCCAAACAGATCGATATTAAAAAACTG
CGGGAGGAAGCGGCCATTATGATGAGCTGCAAAGGCTCAATCAAAGCGAACCGCCATTTGCGAAACGACGAAATCAAAGC
GCTCTTGGACGACCTGCGCCGAACGACAGACCCGTTCACATGCCCGCACGGCCGGCCGATCATAATTCACCACAGCACGT
ATGAGATGGAGAAGATGTTTAAGCGTGTGATGTAG

Domains

Predicted by InterProScan.

MutL C terminal dimerisation domain (MutL_C)

(439-580)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(25-111)

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(209-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

46.202

100

0.478