Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   ACFW98_RS02395 Genome accession   NZ_CP170719
Coordinates   501536..501967 (+) Length   143 a.a.
NCBI ID   WP_003154113.1    Uniprot ID   A7Z4X3
Organism   Bacillus amyloliquefaciens strain JP5008     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 496536..506967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW98_RS02375 (ACFW98_02375) spoVS 497106..497366 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  ACFW98_RS02380 (ACFW98_02380) tdh 497624..498670 (+) 1047 WP_015417499.1 L-threonine 3-dehydrogenase -
  ACFW98_RS02385 (ACFW98_02385) - 498683..499861 (+) 1179 WP_094032442.1 glycine C-acetyltransferase -
  ACFW98_RS02390 (ACFW98_02390) miaB 500004..501533 (+) 1530 WP_012117585.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ACFW98_RS02395 (ACFW98_02395) ymcA 501536..501967 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  ACFW98_RS02400 (ACFW98_02400) cotE 502220..502765 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  ACFW98_RS02405 (ACFW98_02405) hexA 502883..505468 (+) 2586 WP_395097023.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16082.22 Da        Isoelectric Point: 5.0213

>NTDB_id=945141 ACFW98_RS02395 WP_003154113.1 501536..501967(+) (ymcA) [Bacillus amyloliquefaciens strain JP5008]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=945141 ACFW98_RS02395 WP_003154113.1 501536..501967(+) (ymcA) [Bacillus amyloliquefaciens strain JP5008]
ATGACGCTTTACTCAAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCCGAGGCGCAGATTAACGAAAATGAAAAAGTCTCTGCGATTATTAATCAGATTAAAACCCTGCAAA
AGCAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAACAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATCATTACATCTACCGGAGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916