Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R9B17_RS05250 Genome accession   NZ_AP028399
Coordinates   1015014..1015565 (+) Length   183 a.a.
NCBI ID   WP_002853013.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11515     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1010014..1020565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9B17_RS05215 (B11515_10290) - 1010205..1010630 (+) 426 WP_002859154.1 GNAT family N-acetyltransferase -
  R9B17_RS05220 (B11515_10310) - 1010694..1011313 (+) 620 Protein_1005 NAD(P)H-dependent oxidoreductase -
  R9B17_RS05225 (B11515_10320) - 1011313..1011918 (+) 606 WP_032586321.1 NAD(P)H-dependent oxidoreductase -
  R9B17_RS05230 (B11515_10330) pgsA 1012043..1012579 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  R9B17_RS05235 (B11515_10340) rseP 1012576..1013682 (+) 1107 WP_002852927.1 RIP metalloprotease RseP -
  R9B17_RS05240 (B11515_10350) - 1013675..1014541 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  R9B17_RS05245 (B11515_10360) rpsF 1014628..1015005 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  R9B17_RS05250 (B11515_10370) ssb 1015014..1015565 (+) 552 WP_002853013.1 single-stranded DNA-binding protein Machinery gene
  R9B17_RS05255 (B11515_10380) rpsR 1015576..1015836 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  R9B17_RS05260 (B11515_10390) lon 1015896..1018271 (-) 2376 WP_317739034.1 endopeptidase La -
  R9B17_RS05265 (B11515_10400) - 1018288..1018935 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  R9B17_RS05270 (B11515_10410) fliW 1019094..1019483 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  R9B17_RS05275 (B11515_10420) proC 1019483..1020214 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  R9B17_RS05280 (B11515_10430) ctsT 1020211..1020513 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20710.60 Da        Isoelectric Point: 5.0431

>NTDB_id=94510 R9B17_RS05250 WP_002853013.1 1015014..1015565(+) (ssb) [Campylobacter jejuni strain BCH-11515]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=94510 R9B17_RS05250 WP_002853013.1 1015014..1015565(+) (ssb) [Campylobacter jejuni strain BCH-11515]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.503

100

0.393
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361

Multiple sequence alignment