Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACFXAA_RS16115 Genome accession   NZ_CP170717
Coordinates   3335868..3336512 (+) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens strain JP5014     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3330868..3341512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAA_RS16095 (ACFXAA_16095) - 3331267..3331608 (-) 342 WP_015418107.1 hypothetical protein -
  ACFXAA_RS16100 (ACFXAA_16100) degQ 3332074..3332214 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  ACFXAA_RS16105 (ACFXAA_16105) comQ 3332345..3333331 (+) 987 WP_269195024.1 class 1 isoprenoid biosynthesis enzyme Regulator
  ACFXAA_RS16110 (ACFXAA_16110) comP 3333484..3335787 (+) 2304 WP_040238945.1 histidine kinase Regulator
  ACFXAA_RS16115 (ACFXAA_16115) comA 3335868..3336512 (+) 645 WP_003152052.1 response regulator transcription factor Regulator
  ACFXAA_RS16120 (ACFXAA_16120) - 3336534..3336917 (+) 384 WP_007613430.1 hotdog fold thioesterase -
  ACFXAA_RS16125 (ACFXAA_16125) mnhG 3336957..3337331 (-) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  ACFXAA_RS16130 (ACFXAA_16130) - 3337315..3337599 (-) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  ACFXAA_RS16135 (ACFXAA_16135) - 3337599..3338075 (-) 477 WP_007613428.1 Na+/H+ antiporter subunit E -
  ACFXAA_RS16140 (ACFXAA_16140) - 3338081..3339562 (-) 1482 WP_268540451.1 Na+/H+ antiporter subunit D -
  ACFXAA_RS16145 (ACFXAA_16145) - 3339555..3339896 (-) 342 WP_015418102.1 Na(+)/H(+) antiporter subunit C -
  ACFXAA_RS16150 (ACFXAA_16150) - 3339896..3340327 (-) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=945087 ACFXAA_RS16115 WP_003152052.1 3335868..3336512(+) (comA) [Bacillus amyloliquefaciens strain JP5014]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=945087 ACFXAA_RS16115 WP_003152052.1 3335868..3336512(+) (comA) [Bacillus amyloliquefaciens strain JP5014]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGACGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCTAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGACAACGTAC
TATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864