Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R9B17_RS00930 Genome accession   NZ_AP028399
Coordinates   184420..185925 (-) Length   501 a.a.
NCBI ID   WP_002882259.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11515     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 179420..190925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9B17_RS00900 (B11515_01780) - 179622..180806 (-) 1185 WP_032586631.1 metallophosphoesterase -
  R9B17_RS00905 (B11515_01790) - 180816..181025 (-) 210 WP_002851709.1 alkylphosphonate utilization protein -
  R9B17_RS00910 (B11515_01800) - 181018..181737 (-) 720 WP_002900759.1 TerC family protein -
  R9B17_RS00915 (B11515_01810) purN 181809..182375 (-) 567 WP_032586632.1 phosphoribosylglycinamide formyltransferase -
  R9B17_RS00920 (B11515_01820) - 182366..183736 (-) 1371 WP_032586634.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  R9B17_RS00925 (B11515_01830) - 183720..184418 (-) 699 WP_002826913.1 NYN domain-containing protein -
  R9B17_RS00930 (B11515_01840) comM 184420..185925 (-) 1506 WP_002882259.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R9B17_RS00935 (B11515_01850) def 185922..186449 (-) 528 WP_002882260.1 peptide deformylase -
  R9B17_RS00940 (B11515_01860) clpP 186485..187069 (-) 585 WP_002806309.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  R9B17_RS00945 (B11515_01870) tig 187069..188403 (-) 1335 WP_032586635.1 trigger factor -
  R9B17_RS00950 (B11515_01880) folE 188546..189118 (+) 573 WP_002869503.1 GTP cyclohydrolase I FolE -
  R9B17_RS00955 (B11515_01890) fliI 189118..190503 (+) 1386 WP_002900770.1 flagellar protein export ATPase FliI -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56356.36 Da        Isoelectric Point: 8.7417

>NTDB_id=94495 R9B17_RS00930 WP_002882259.1 184420..185925(-) (comM) [Campylobacter jejuni strain BCH-11515]
MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASVAIKESVERIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDL
AIALLILLQNEELDDFFVVGELGLDGSIKSTNELFSLLLFLSAKIKKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
FKEKNYENFRFSHNHPLFASPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALGMHNILLEGSPGSGKSMCAKRLV
YIMPPQSLSEILTQNAYMSLDSKDCEFTKIRAFRHPHHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIE
SLREPLEDHKIHISRVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLYVAMDEISK
DDKTSISSKEMSEKILQAFIFSKKRGQKEFNGKLKDEDLSRFCVLEKDAKDTLDLAISRYNLSLRSLNKILKVSRSIADL
EQSLNINKTHILEALSFRARN

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=94495 R9B17_RS00930 WP_002882259.1 184420..185925(-) (comM) [Campylobacter jejuni strain BCH-11515]
ATGAAAAAACTAAAGTGCATAAGCTTTCATGAAGGCTTAGACATTATAGAGGTAGAATCCACTTTTACAAGAGGTTTGCC
AAATTTAAGCATAGTAGGACTTGCAAGTGTAGCGATTAAGGAAAGTGTCGAACGCATCAAAGCCACGCTTTTAAGTTGTG
ATTTTGCTTTTCCTGCTAAAAAAATTACTATTAATCTTAGTCCTTCAGGCATCCCAAAAAAGGGGTCGCATTTTGATTTG
GCTATCGCTTTATTAATCCTTTTGCAAAATGAAGAATTAGATGACTTTTTTGTAGTAGGAGAATTAGGACTTGATGGAAG
TATTAAAAGCACAAATGAGCTTTTTTCTTTGCTTTTGTTTCTTTCTGCTAAAATTAAAAAAGCTAAAATCGTTGTTCCAA
AAAGTATAGCACAAAAAGCTTCCATGATACCAAATTTAGAGGTTTATGGACTTGAAAATTTAAATGAAGCAATAGAGTTT
TTTAAAGAAAAAAATTATGAAAATTTTCGTTTTTCTCACAATCATCCTTTATTCGCAAGTCCTTTACAAATAGAAAATGA
AATTTTTTTACAAAATATGGATTTTAAACTTGATTTTAAAGATATCAAAGGGCAGGAAAAAGCTAAAAGAGCTTGTATGA
TAGCTGCTTTAGGTATGCATAATATCTTACTTGAAGGAAGTCCAGGAAGTGGTAAAAGTATGTGTGCTAAACGCCTTGTT
TATATCATGCCTCCTCAAAGTTTAAGTGAAATTTTAACGCAAAATGCTTATATGTCTTTAGATTCAAAAGATTGTGAATT
TACTAAAATTCGTGCTTTTCGTCATCCTCATCATACTTCTACAAGAGCAAGTATTTTTGGCGGAGGAACAAAAAATGCTA
GAATTGGAGAAGTCGCACTTGCAAATGGTGGAGTATTGTTTTTTGATGAATTTCCACATTTTAACAAGCAAATCATAGAG
AGTTTAAGAGAACCTTTGGAGGATCATAAAATTCATATTTCAAGAGTAAATTCTAAAATCACTTATGAAACAAAATTTAG
CTTTATAGCTGCCCAAAATCCTTGTCCTTGTGGAAATTTATTTTCTAAAAATCTTTCTTGTGTTTGTAGTGAAAATGAGA
TTAAAAAATACAAAAATCACATTTCAGCTCCTATTATGGATAGGATTGATCTTTATGTAGCTATGGATGAGATCAGCAAG
GATGATAAAACGAGTATAAGTTCTAAAGAAATGAGTGAAAAAATTTTACAAGCTTTTATTTTTAGTAAAAAACGGGGGCA
AAAAGAATTTAATGGGAAATTAAAAGATGAAGATTTAAGTCGTTTTTGTGTATTGGAAAAAGATGCCAAAGATACGCTAG
ATTTAGCAATTTCACGTTATAATCTTTCTTTGCGATCGCTTAATAAAATTTTAAAAGTTTCAAGAAGTATAGCGGATTTA
GAACAAAGTCTTAATATTAACAAAACCCATATTTTAGAAGCTTTAAGCTTTAGAGCAAGGAATTAA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)

Subunit ChlI of Mg-chelatase (ChlI)

(18-134)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

47.695

99.601

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

36.273

99.601

0.361

Multiple sequence alignment