Detailed information NTG0944931

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: V8U11_RS28430
• Genome accession: NZ_CP146886
• Coordinates: 6253702..6255030 (+)
• Length: 442 a.a.
• NCBI ID: WP_338806272.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain ZH2
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 6248702..6260030

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V8U11_RS28410 (V8U11_28410)	pgeF	6250190..6250915 (-)	726	WP_081359717.1	peptidoglycan editing factor PgeF	-
V8U11_RS28415 (V8U11_28415)	rluD	6250912..6251874 (-)	963	WP_009050933.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
V8U11_RS28420 (V8U11_28420)	-	6252027..6253049 (+)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
V8U11_RS28425 (V8U11_28425)	-	6253184..6253417 (+)	234	WP_007924721.1	PP0621 family protein	-
V8U11_RS28430 (V8U11_28430)	pilR	6253702..6255030 (+)	1329	WP_338806272.1	sigma-54 dependent transcriptional regulator	Regulator
V8U11_RS28435 (V8U11_28435)	thiO	6255027..6256127 (-)	1101	WP_124309598.1	glycine oxidase ThiO	-
V8U11_RS28440 (V8U11_28440)	-	6256182..6256583 (-)	402	WP_038575642.1	type IV pilin protein	-
V8U11_RS28445 (V8U11_28445)	-	6256597..6259668 (-)	3072	WP_124309599.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48844.26 Da
• Isoelectric Point: 8.2044

>NTDB_id=944931 V8U11_RS28430 WP_338806272.1 6253702..6255030(+) (pilR) [Pseudomonas chlororaphis strain ZH2]
MSPRQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQHHRLRMPLA
ILSTCPHQETAVQALKAGAIDFLSKPVALARLRELLNGPLPGSTPTNPATGPLLGDSTAMHKLRMQIDKLAQSQASIYIS
GESGSGKELVARAIHDQGPRAGRAFVPINCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKTLQAEVHAGRFRQDLYYRLNVIELAVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPGALLALQGYDFPGNVRELENLLERAHTLCENRQIEARDLCLTPNSAHPAIAPGPAQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=944931 V8U11_RS28430 WP_338806272.1 6253702..6255030(+) (pilR) [Pseudomonas chlororaphis strain ZH2]
ATGAGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGGAT
GCAGCGCCATACCCGCAGCGCCCGCACCCTGGGCGAAGCGCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCCTGA
GCGACCTGCATCTGCCCGACGGTACGGGTCTGGAATTACTCGAGCATATCCAGCACCACCGGCTGCGAATGCCGCTGGCC
ATACTCAGCACCTGCCCCCACCAGGAAACCGCGGTCCAGGCCCTGAAGGCCGGCGCCATCGACTTCCTGAGCAAACCCGT
GGCCCTGGCGCGCCTGCGCGAGCTGCTGAACGGCCCCCTGCCCGGATCGACACCAACGAACCCAGCTACCGGCCCACTGC
TCGGCGATTCGACCGCCATGCACAAACTGCGCATGCAGATCGACAAACTGGCCCAGAGTCAGGCCTCGATCTATATCAGC
GGAGAGTCCGGCAGCGGCAAGGAACTGGTCGCCCGTGCGATCCACGACCAAGGACCACGGGCCGGCCGGGCCTTCGTGCC
AATCAACTGCGGGGCCATTCCGCCGGAACTGATGGAGAGCGAGTTTTTCGGTCATCGCAAAGGCAGCTTCAGCGGCGCCA
TCGAAGACAAACCCGGCCTGTTCCAGGCAGCGCACGGCGGCACCCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCGGTGCGCTGTGTCGGCGGGCAGCAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACCCACAAGACGCTGCAGGCGGAAGTGCATGCCGGGCGCTTTCGCCAGGACCTCTACTACCGCC
TGAACGTGATCGAGCTGGCGGTGCCACCGCTAAGGGCGCGCAAGGCTGATATCGAACCCTTGGCCACAGCCATACTCGAG
CGCCTGGCGCAGGGCAACGGCCAACAGTTGGCGCGGCTCCAGCCAGGCGCGCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAGCTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCAGATCGAAGCACGCGATC
TATGCCTGACGCCCAATAGCGCCCACCCGGCCATCGCGCCCGGCCCGGCACAGGTGATCGACCTTGAAGGTTATCTGCAG
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAGCCT
GTCGTTTCGTTCGATGCGCTACAGGCTGAAGAAACTCGGCCTGGATTAA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Response regulator receiver domain (Response_reg) (7-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	66.444	100	0.676
pilR	Acinetobacter baumannii strain A118	43.573	100	0.452