Detailed information NTG0944870

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: ACFXAD_RS07495
• Genome accession: NZ_CP170653
• Coordinates: 1471810..1473072 (+)
• Length: 420 a.a.
• NCBI ID: WP_003152620.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain JP5011
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1466810..1478072

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFXAD_RS07475 (ACFXAD_07475)	leuC	1466893..1468311 (+)	1419	WP_003152606.1	3-isopropylmalate dehydratase large subunit	-
ACFXAD_RS07480 (ACFXAD_07480)	leuD	1468327..1468926 (+)	600	WP_007408146.1	3-isopropylmalate dehydratase small subunit	-
ACFXAD_RS07485 (ACFXAD_07485)	ddcA	1469043..1470047 (+)	1005	WP_053573152.1	DNA damage checkpoint antagonist DdcA	-
ACFXAD_RS07490 (ACFXAD_07490)	tig	1470264..1471538 (+)	1275	WP_003152618.1	trigger factor	-
ACFXAD_RS07495 (ACFXAD_07495)	clpX	1471810..1473072 (+)	1263	WP_003152620.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
ACFXAD_RS07500 (ACFXAD_07500)	lonB	1473223..1474887 (+)	1665	WP_053573153.1	ATP-dependent protease LonB	-
ACFXAD_RS07505 (ACFXAD_07505)	lon	1475087..1477411 (+)	2325	WP_007612896.1	endopeptidase La	-
ACFXAD_RS07510 (ACFXAD_07510)	yihA	1477408..1477995 (+)	588	WP_007612895.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-

Sequence

Protein

• Length: 420 a.a.
• Molecular weight: 46188.97 Da
• Isoelectric Point: 4.5163

>NTDB_id=944870 ACFXAD_RS07495 WP_003152620.1 1471810..1473072(+) (clpX) [Bacillus amyloliquefaciens strain JP5011]
MFKFNEEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCTEIVEEELGTEEEVEFKDVPKPQEIREILNEYVIGQDQ
AKKSLAVAVYNHYKRINSNSKVDDVELSKSNISLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENILL
KLIQAADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNI
LFICGGAFDGIEQIIKRRLGQKVIGFGSDNKAADLEKEELLSKVLPEDLLRFGLIPEFIGRLPVIASLEQLDETALVEIL
TKPKNALVKQYKKMLELDDVELEFEGEALSEIAKKAIERKTGARGLRSIIEGIMLDVMFDLPSRDDIEKCVITGATVADG
EAPRLVLKDGTVVGQDKTSA

Nucleotide

• Length: 1263 bp

>NTDB_id=944870 ACFXAD_RS07495 WP_003152620.1 1471810..1473072(+) (clpX) [Bacillus amyloliquefaciens strain JP5011]
ATGTTTAAATTCAACGAGGAAAAAGGACAATTGAAATGCTCGTTCTGCGGAAAAACGCAAGATCAGGTTCGTAAGCTGGT
TGCAGGACCGGGTGTATATATATGCGACGAATGTATTGAGCTCTGTACAGAAATCGTAGAGGAAGAGCTTGGTACAGAAG
AAGAAGTCGAATTTAAAGACGTTCCGAAGCCGCAGGAAATCCGTGAGATTCTGAATGAATATGTCATCGGACAGGATCAG
GCGAAGAAATCACTTGCGGTTGCGGTATACAACCATTACAAACGCATCAACTCCAACAGTAAAGTGGATGATGTCGAGCT
TTCTAAAAGTAATATTTCTTTAATCGGACCGACTGGAAGCGGGAAAACACTTCTTGCCCAGACGCTTGCGCGTATTCTGA
ACGTGCCGTTTGCGATCGCGGACGCTACATCTCTGACTGAAGCCGGATATGTCGGTGAGGACGTAGAAAACATCCTCCTC
AAGCTGATTCAGGCAGCAGACTATGATGTGGAAAAAGCAGAAAAAGGTATTATTTATATCGATGAAATCGATAAAGTAGC
GCGAAAATCTGAAAACCCGTCCATTACACGTGACGTATCAGGCGAAGGCGTTCAGCAGGCGCTGCTGAAAATTCTTGAAG
GAACGGTTGCAAGCGTGCCGCCTCAAGGAGGACGCAAACATCCTCATCAGGAATTCATCCAGATCGATACGACGAACATC
CTGTTCATTTGCGGCGGTGCATTTGACGGCATCGAACAAATCATCAAACGCCGTCTCGGACAAAAAGTCATCGGCTTCGG
CTCTGATAATAAAGCGGCAGACCTGGAAAAAGAAGAACTGCTTTCTAAAGTTCTTCCGGAAGACTTGCTCCGTTTCGGTC
TGATTCCTGAATTCATCGGCCGTCTTCCTGTCATTGCAAGCCTTGAGCAGCTTGACGAAACGGCACTGGTTGAAATTCTG
ACTAAACCGAAAAACGCACTCGTCAAACAATACAAGAAAATGTTAGAACTTGATGATGTCGAGCTTGAATTTGAAGGCGA
GGCATTATCTGAAATTGCGAAAAAAGCGATCGAGCGTAAAACAGGCGCACGCGGCCTGCGTTCTATCATTGAAGGCATCA
TGCTTGACGTCATGTTTGATCTGCCGTCCCGCGATGATATTGAAAAATGTGTCATTACCGGAGCGACAGTCGCAGACGGT
GAAGCGCCGCGTCTTGTATTAAAAGACGGTACTGTTGTCGGCCAAGATAAAACATCAGCATAA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (311-389)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (109-305)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	68.262	94.524	0.645
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	59.158	96.19	0.569