Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACFXAD_RS07335 Genome accession   NZ_CP170653
Coordinates   1437707..1439479 (+) Length   590 a.a.
NCBI ID   WP_053573145.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5011     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1432707..1444479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAD_RS07310 (ACFXAD_07310) - 1432818..1433597 (+) 780 WP_053573143.1 enoyl-CoA hydratase -
  ACFXAD_RS07315 (ACFXAD_07315) - 1433611..1434384 (+) 774 WP_007408121.1 electron transfer flavoprotein subunit beta/FixA family protein -
  ACFXAD_RS07320 (ACFXAD_07320) - 1434416..1435393 (+) 978 WP_015417950.1 electron transfer flavoprotein subunit alpha/FixB family protein -
  ACFXAD_RS07325 (ACFXAD_07325) - 1435607..1437097 (+) 1491 WP_053573144.1 alpha-N-arabinofuranosidase -
  ACFXAD_RS07330 (ACFXAD_07330) trxA 1437250..1437564 (+) 315 WP_003152560.1 thioredoxin -
  ACFXAD_RS07335 (ACFXAD_07335) uvrC 1437707..1439479 (+) 1773 WP_053573145.1 excinuclease ABC subunit UvrC Machinery gene
  ACFXAD_RS07340 (ACFXAD_07340) - 1439846..1441075 (+) 1230 WP_007408127.1 aspartate kinase -
  ACFXAD_RS07345 (ACFXAD_07345) - 1441122..1441568 (-) 447 WP_007612940.1 YslB family protein -
  ACFXAD_RS07350 (ACFXAD_07350) sdhC 1441865..1442473 (+) 609 WP_003152571.1 succinate dehydrogenase cytochrome B558 -
  ACFXAD_RS07355 (ACFXAD_07355) sdhA 1442507..1444267 (+) 1761 WP_003152573.1 succinate dehydrogenase flavoprotein subunit -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 68225.10 Da        Isoelectric Point: 9.5628

>NTDB_id=944868 ACFXAD_RS07335 WP_053573145.1 1437707..1439479(+) (uvrC) [Bacillus amyloliquefaciens strain JP5011]
MNKQLKEKLALLPDQPGCYLMKDRQKTVIYVGKAKVLKNRVRSYFTGSHDAKTQRLVTEIEDFEYIVTSSNLEALILEMN
LIKKYDPKYNVMLKDDKTYPFIKITHERHPRLIVTRNVKKDKGSYFGPYPNVQAARETKKLLDRLYPLRKCSKLPDRVCL
YYHLGQCLAPCVKDISEETNREIVEDITRFLKGGHNEIKKELEAKMAEAAEKLEFERAKEFRDQLAHIESTMEKQKMTMN
DLLDRDVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPMYQEADEEFLTFIGQFYSKNNHFLPKEILVPDSVDRDMITEL
LETAVHQPKKGPKKELLLLAHKNAKIALREKFSLIERDEERSIGAAERLGEALNIYTPHRIEAFDNSNIQGTNPVSAMIV
FIDGKPNKKEYRKYKIKTVTGPDDYGSMREVVRRRYTRVLRENLPLPDLIIIDGGKGQINAARDVLENELGLDVPVAGLA
KDDKHRTSNLLIGDPLEPVLLERNSQEFYLLQRIQDEVHRFAISFHRQIRGKSAFQSVLDDIPGIGEKRKKMLLKHFGSV
KKMKEASLDDIKKAGVPAAAAQLLFEKLKK

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=944868 ACFXAD_RS07335 WP_053573145.1 1437707..1439479(+) (uvrC) [Bacillus amyloliquefaciens strain JP5011]
ATGAATAAACAACTGAAAGAAAAACTGGCCCTCCTTCCCGATCAGCCGGGCTGTTATTTAATGAAAGATCGTCAAAAAAC
AGTCATCTACGTGGGGAAAGCGAAAGTCTTGAAAAACAGGGTGCGATCTTATTTCACCGGTTCTCACGACGCAAAAACCC
AACGGCTTGTGACGGAGATTGAGGACTTTGAATATATCGTGACTTCCTCCAATCTTGAAGCGCTTATTTTGGAAATGAAT
CTGATTAAAAAATACGATCCGAAATACAATGTCATGCTGAAAGATGATAAAACCTATCCCTTTATTAAAATCACCCATGA
ACGCCATCCGCGGCTGATTGTCACCCGGAATGTCAAAAAAGACAAAGGAAGCTATTTCGGCCCGTATCCGAATGTGCAGG
CGGCGCGGGAAACGAAAAAACTGCTGGACCGCCTTTACCCGCTCAGGAAATGCTCAAAGCTTCCGGACCGCGTCTGTCTC
TATTATCATCTCGGACAATGCCTTGCCCCATGTGTAAAGGATATATCTGAGGAGACAAACCGCGAGATTGTTGAAGACAT
TACCCGTTTTTTAAAGGGAGGGCATAACGAAATCAAAAAAGAGCTCGAAGCGAAAATGGCAGAAGCGGCGGAAAAGCTTG
AATTTGAACGGGCTAAAGAATTCCGCGACCAGCTTGCTCACATCGAATCGACGATGGAGAAGCAAAAAATGACCATGAAT
GACCTTCTGGACCGCGATGTGTTTGCATATGCCTACGATAAAGGCTGGATGTGCGTCCAAGTCTTTTTCATACGCCAAGG
AAAACTGATCGAACGTGACGTCAGCATGTTTCCGATGTATCAGGAAGCGGATGAAGAATTTCTGACCTTCATCGGCCAGT
TCTACTCTAAAAACAATCACTTTCTGCCTAAGGAAATTCTGGTGCCTGACAGCGTTGACAGGGACATGATCACCGAGCTG
TTGGAAACCGCCGTGCATCAGCCGAAAAAAGGCCCGAAAAAAGAGCTGCTTTTGCTTGCGCACAAAAATGCGAAAATCGC
CCTGCGGGAAAAATTTTCGTTAATCGAGCGGGATGAGGAACGGTCAATCGGTGCAGCCGAACGGCTCGGCGAAGCGCTGA
ATATTTACACGCCGCATCGGATTGAAGCGTTTGACAACTCCAATATTCAAGGCACAAACCCCGTATCGGCCATGATTGTC
TTTATTGACGGAAAACCGAATAAAAAGGAATACCGCAAATATAAAATTAAAACCGTAACAGGGCCTGATGATTACGGCTC
AATGAGGGAAGTCGTCAGAAGAAGATACACGAGGGTGCTTCGCGAAAATCTTCCGCTGCCGGATTTAATCATCATTGACG
GCGGAAAAGGCCAGATTAACGCGGCGCGCGACGTGCTCGAGAATGAGCTCGGTCTTGATGTCCCGGTAGCGGGATTGGCG
AAAGATGATAAACACCGAACATCCAACCTTTTGATCGGCGACCCGCTTGAACCGGTGTTGCTGGAGCGGAACAGCCAAGA
GTTTTACCTGCTTCAGCGTATTCAGGACGAAGTTCACCGTTTTGCGATCAGCTTTCACAGACAGATCCGGGGAAAAAGCG
CCTTTCAATCCGTTCTGGATGATATCCCCGGAATCGGCGAAAAACGCAAAAAAATGCTCTTAAAACATTTCGGATCTGTC
AAAAAGATGAAGGAAGCAAGCCTTGACGATATCAAAAAAGCGGGTGTGCCGGCCGCGGCGGCCCAGCTGCTGTTTGAAAA
ATTAAAAAAATAG

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(16-90)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(373-523)

UvrB/uvrC motif (UVR)

(198-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

59.694

99.661

0.595
  uvrC Streptococcus pneumoniae R6

59.354

99.661

0.592
  uvrC Streptococcus pneumoniae D39

59.354

99.661

0.592