Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   ACFXAD_RS02760 Genome accession   NZ_CP170653
Coordinates   519816..519935 (-) Length   39 a.a.
NCBI ID   WP_015240778.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5011     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 514816..524935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAD_RS02720 (ACFXAD_02720) speE 515215..516045 (+) 831 WP_053573957.1 spermidine synthase -
  ACFXAD_RS02725 (ACFXAD_02725) speB 516104..516976 (+) 873 WP_007407646.1 agmatinase -
  ACFXAD_RS02730 (ACFXAD_02730) - 517144..517362 (+) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  ACFXAD_RS02735 (ACFXAD_02735) - 517953..518465 (-) 513 WP_053573958.1 stage II sporulation protein M -
  ACFXAD_RS02740 (ACFXAD_02740) - 518509..518790 (-) 282 WP_007407643.1 hypothetical protein -
  ACFXAD_RS02745 (ACFXAD_02745) - 518978..519163 (-) 186 WP_007407642.1 DUF4177 domain-containing protein -
  ACFXAD_RS02750 (ACFXAD_02750) - 519198..519401 (-) 204 WP_007407641.1 hypothetical protein -
  ACFXAD_RS02755 (ACFXAD_02755) - 519415..519618 (-) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  ACFXAD_RS02760 (ACFXAD_02760) phrF 519816..519935 (-) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  ACFXAD_RS02765 (ACFXAD_02765) rapF 519919..521064 (-) 1146 WP_007407638.1 tetratricopeptide repeat protein Regulator
  ACFXAD_RS02770 (ACFXAD_02770) - 521356..521784 (+) 429 WP_014419128.1 DUF1934 domain-containing protein -
  ACFXAD_RS02775 (ACFXAD_02775) argS 521781..523451 (+) 1671 WP_053573959.1 arginine--tRNA ligase -
  ACFXAD_RS02780 (ACFXAD_02780) narK 523586..524776 (+) 1191 WP_007407632.1 nitrate transporter NarK -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4281.16 Da        Isoelectric Point: 10.0233

>NTDB_id=944836 ACFXAD_RS02760 WP_015240778.1 519816..519935(-) (phrF) [Bacillus amyloliquefaciens strain JP5011]
MKLKYKLALTCLAISTVFVSADIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=944836 ACFXAD_RS02760 WP_015240778.1 519816..519935(-) (phrF) [Bacillus amyloliquefaciens strain JP5011]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterProScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462