Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ACFXAD_RS00755 Genome accession   NZ_CP170653
Coordinates   126517..126807 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain JP5011     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 121517..131807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFXAD_RS00740 (ACFXAD_00740) - 121738..123063 (-) 1326 WP_108702423.1 G5 and 3D domain-containing protein -
  ACFXAD_RS00745 (ACFXAD_00745) - 123198..123965 (-) 768 WP_053573817.1 TatD family hydrolase -
  ACFXAD_RS00750 (ACFXAD_00750) metG 124042..126033 (-) 1992 WP_053573816.1 methionine--tRNA ligase -
  ACFXAD_RS00755 (ACFXAD_00755) abrB 126517..126807 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  ACFXAD_RS00760 (ACFXAD_00760) rsmI 126857..127738 (-) 882 WP_053573815.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ACFXAD_RS00765 (ACFXAD_00765) - 127713..128012 (-) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  ACFXAD_RS00770 (ACFXAD_00770) - 127999..128742 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  ACFXAD_RS00775 (ACFXAD_00775) yabA 128803..129162 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  ACFXAD_RS00780 (ACFXAD_00780) yaaT 129177..130004 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT Regulator
  ACFXAD_RS00785 (ACFXAD_00785) holB 130007..130996 (-) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  ACFXAD_RS00790 (ACFXAD_00790) - 131008..131448 (-) 441 WP_004264730.1 YaaR family protein -
  ACFXAD_RS00795 (ACFXAD_00795) darA 131461..131790 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=944824 ACFXAD_RS00755 WP_169510469.1 126517..126807(+) (abrB) [Bacillus amyloliquefaciens strain JP5011]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=944824 ACFXAD_RS00755 WP_169510469.1 126517..126807(+) (abrB) [Bacillus amyloliquefaciens strain JP5011]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAGGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterProScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979