Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   ACFW99_RS08770 Genome accession   NZ_CP170651
Coordinates   1748752..1749183 (+) Length   143 a.a.
NCBI ID   WP_003154113.1    Uniprot ID   A7Z4X3
Organism   Bacillus amyloliquefaciens strain JP5025     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1743752..1754183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFW99_RS08750 (ACFW99_08750) spoVS 1744322..1744582 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  ACFW99_RS08755 (ACFW99_08755) tdh 1744840..1745886 (+) 1047 WP_015417499.1 L-threonine 3-dehydrogenase -
  ACFW99_RS08760 (ACFW99_08760) - 1745899..1747077 (+) 1179 WP_029325912.1 glycine C-acetyltransferase -
  ACFW99_RS08765 (ACFW99_08765) miaB 1747220..1748749 (+) 1530 WP_015417500.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  ACFW99_RS08770 (ACFW99_08770) ymcA 1748752..1749183 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  ACFW99_RS08775 (ACFW99_08775) cotE 1749438..1749983 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  ACFW99_RS08780 (ACFW99_08780) hexA 1750102..1752687 (+) 2586 WP_033574833.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16082.22 Da        Isoelectric Point: 5.0213

>NTDB_id=944740 ACFW99_RS08770 WP_003154113.1 1748752..1749183(+) (ymcA) [Bacillus amyloliquefaciens strain JP5025]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=944740 ACFW99_RS08770 WP_003154113.1 1748752..1749183(+) (ymcA) [Bacillus amyloliquefaciens strain JP5025]
ATGACGCTTTACTCTAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTCTTCAAACGCGCCGAGGCGCAGATTAACGAAAATGAAAAAGTCTCTGCGATTATTAATCAGATTAAAACTCTGCAAA
AGCAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAACAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATCATTACATCTACCGGAGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAATAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916