Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   V9W58_RS13585 Genome accession   NZ_CP146764
Coordinates   2724376..2724711 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain AP202     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2719376..2729711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W58_RS13565 (V9W58_13565) gcvT 2719982..2721082 (-) 1101 WP_076424966.1 glycine cleavage system aminomethyltransferase GcvT -
  V9W58_RS13570 (V9W58_13570) - 2721506..2723176 (+) 1671 WP_031378948.1 SNF2-related protein -
  V9W58_RS13575 (V9W58_13575) - 2723198..2723992 (+) 795 WP_076424968.1 YqhG family protein -
  V9W58_RS13580 (V9W58_13580) sinI 2724169..2724342 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  V9W58_RS13585 (V9W58_13585) sinR 2724376..2724711 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  V9W58_RS13590 (V9W58_13590) - 2724759..2725544 (-) 786 WP_076424970.1 TasA family protein -
  V9W58_RS13595 (V9W58_13595) - 2725609..2726193 (-) 585 WP_015240205.1 signal peptidase I -
  V9W58_RS13600 (V9W58_13600) tapA 2726165..2726836 (-) 672 WP_076424972.1 amyloid fiber anchoring/assembly protein TapA -
  V9W58_RS13605 (V9W58_13605) - 2727095..2727424 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  V9W58_RS13610 (V9W58_13610) - 2727463..2727642 (-) 180 WP_003153093.1 YqzE family protein -
  V9W58_RS13615 (V9W58_13615) comGG 2727699..2728076 (-) 378 WP_012117980.1 competence type IV pilus minor pilin ComGG Machinery gene
  V9W58_RS13620 (V9W58_13620) comGF 2728077..2728577 (-) 501 WP_012117981.1 competence type IV pilus minor pilin ComGF -
  V9W58_RS13625 (V9W58_13625) comGE 2728486..2728800 (-) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  V9W58_RS13630 (V9W58_13630) comGD 2728784..2729221 (-) 438 WP_251248306.1 competence type IV pilus minor pilin ComGD Machinery gene
  V9W58_RS13635 (V9W58_13635) comGC 2729211..2729519 (-) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=944586 V9W58_RS13585 WP_003153104.1 2724376..2724711(+) (sinR) [Bacillus velezensis strain AP202]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=944586 V9W58_RS13585 WP_003153104.1 2724376..2724711(+) (sinR) [Bacillus velezensis strain AP202]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991