Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   V9W58_RS01805 Genome accession   NZ_CP146764
Coordinates   334912..335349 (-) Length   145 a.a.
NCBI ID   WP_218791482.1    Uniprot ID   -
Organism   Bacillus velezensis strain AP202     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 329912..340349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W58_RS01780 (V9W58_01780) - 330931..332067 (+) 1137 WP_052827030.1 zinc-dependent alcohol dehydrogenase -
  V9W58_RS01785 (V9W58_01785) - 332082..332516 (+) 435 WP_251248589.1 RDD family protein -
  V9W58_RS01790 (V9W58_01790) - 332589..332912 (+) 324 WP_007409357.1 YckD family protein -
  V9W58_RS01795 (V9W58_01795) - 333016..334452 (+) 1437 WP_076425807.1 family 1 glycosylhydrolase -
  V9W58_RS01800 (V9W58_01800) nin/comJ 334493..334891 (-) 399 WP_060563061.1 competence protein ComJ Regulator
  V9W58_RS01805 (V9W58_01805) nucA/comI 334912..335349 (-) 438 WP_218791482.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  V9W58_RS01810 (V9W58_01810) hxlB 335706..336263 (-) 558 WP_251248588.1 6-phospho-3-hexuloisomerase -
  V9W58_RS01815 (V9W58_01815) hxlA 336260..336895 (-) 636 WP_012116769.1 3-hexulose-6-phosphate synthase -
  V9W58_RS01820 (V9W58_01820) - 337127..337489 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16042.33 Da        Isoelectric Point: 8.4850

>NTDB_id=944551 V9W58_RS01805 WP_218791482.1 334912..335349(-) (nucA/comI) [Bacillus velezensis strain AP202]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQAVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=944551 V9W58_RS01805 WP_218791482.1 334912..335349(-) (nucA/comI) [Bacillus velezensis strain AP202]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCCGATAACGAGCAGGCCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.016

86.897

0.634