Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   V9W58_RS01800 Genome accession   NZ_CP146764
Coordinates   334493..334891 (-) Length   132 a.a.
NCBI ID   WP_060563061.1    Uniprot ID   -
Organism   Bacillus velezensis strain AP202     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 329493..339891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W58_RS01775 (V9W58_01775) - 329664..330866 (+) 1203 WP_169510061.1 GTP-binding protein -
  V9W58_RS01780 (V9W58_01780) - 330931..332067 (+) 1137 WP_052827030.1 zinc-dependent alcohol dehydrogenase -
  V9W58_RS01785 (V9W58_01785) - 332082..332516 (+) 435 WP_251248589.1 RDD family protein -
  V9W58_RS01790 (V9W58_01790) - 332589..332912 (+) 324 WP_007409357.1 YckD family protein -
  V9W58_RS01795 (V9W58_01795) - 333016..334452 (+) 1437 WP_076425807.1 family 1 glycosylhydrolase -
  V9W58_RS01800 (V9W58_01800) nin/comJ 334493..334891 (-) 399 WP_060563061.1 competence protein ComJ Regulator
  V9W58_RS01805 (V9W58_01805) nucA/comI 334912..335349 (-) 438 WP_218791482.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  V9W58_RS01810 (V9W58_01810) hxlB 335706..336263 (-) 558 WP_251248588.1 6-phospho-3-hexuloisomerase -
  V9W58_RS01815 (V9W58_01815) hxlA 336260..336895 (-) 636 WP_012116769.1 3-hexulose-6-phosphate synthase -
  V9W58_RS01820 (V9W58_01820) - 337127..337489 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14894.84 Da        Isoelectric Point: 4.7846

>NTDB_id=944550 V9W58_RS01800 WP_060563061.1 334493..334891(-) (nin/comJ) [Bacillus velezensis strain AP202]
MNKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLSFNIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=944550 V9W58_RS01800 WP_060563061.1 334493..334891(-) (nin/comJ) [Bacillus velezensis strain AP202]
TTGAATAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTCTTTTAATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758