Detailed information NTG0944478

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: V9W62_RS01980
• Genome accession: NZ_CP146763
• Coordinates: 391085..392233 (+)
• Length: 382 a.a.
• NCBI ID: WP_007410270.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain AP81
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 386085..397233

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V9W62_RS01960 (V9W62_01960)	-	386482..387165 (-)	684	WP_012116795.1	ABC transporter ATP-binding protein	-
V9W62_RS01965 (V9W62_01965)	-	387180..388616 (-)	1437	WP_043021398.1	ABC transporter permease	-
V9W62_RS01970 (V9W62_01970)	-	388829..389512 (+)	684	WP_007410267.1	response regulator transcription factor	-
V9W62_RS01975 (V9W62_01975)	-	389499..390926 (+)	1428	WP_162533087.1	HAMP domain-containing sensor histidine kinase	-
V9W62_RS01980 (V9W62_01980)	rapC	391085..392233 (+)	1149	WP_007410270.1	Rap family tetratricopeptide repeat protein	Regulator
V9W62_RS01985 (V9W62_01985)	phrC	392217..392336 (+)	120	WP_033575081.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
V9W62_RS01990 (V9W62_01990)	-	392484..392579 (-)	96	WP_012116800.1	YjcZ family sporulation protein	-
V9W62_RS01995 (V9W62_01995)	-	392674..394038 (-)	1365	WP_043021400.1	aspartate kinase	-
V9W62_RS02000 (V9W62_02000)	ceuB	394452..395405 (+)	954	WP_012116802.1	ABC transporter permease	Machinery gene
V9W62_RS02005 (V9W62_02005)	-	395395..396342 (+)	948	WP_012116803.1	iron chelate uptake ABC transporter family permease subunit	-
V9W62_RS02010 (V9W62_02010)	-	396336..397094 (+)	759	WP_043021401.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45475.70 Da
• Isoelectric Point: 4.9916

>NTDB_id=944478 V9W62_RS01980 WP_007410270.1 391085..392233(+) (rapC) [Bacillus velezensis strain AP81]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=944478 V9W62_RS01980 WP_007410270.1 391085..392233(+) (rapC) [Bacillus velezensis strain AP81]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGATTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568