Detailed information NTG0944467

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: ACFKQE_RS03485
• Genome accession: NZ_CP170447
• Coordinates: 711685..712857 (+)
• Length: 390 a.a.
• NCBI ID: WP_154468819.1
• Uniprot ID: -
• Organism: Riemerella anatipestifer strain PAT3
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 706685..717857

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFKQE_RS03455 (ACFKQE_03455)	folK	707470..707895 (-)	426	WP_264309192.1	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	-
ACFKQE_RS03460 (ACFKQE_03460)	sppA	707917..709671 (+)	1755	WP_161531189.1	signal peptide peptidase SppA	-
ACFKQE_RS03465 (ACFKQE_03465)	dtd	709756..710202 (-)	447	WP_161531190.1	D-aminoacyl-tRNA deacylase	-
ACFKQE_RS03470 (ACFKQE_03470)	-	710208..710672 (-)	465	WP_264309193.1	hypothetical protein	-
ACFKQE_RS03475 (ACFKQE_03475)	greA	710775..711242 (+)	468	WP_064971058.1	transcription elongation factor GreA	-
ACFKQE_RS03480 (ACFKQE_03480)	-	711261..711647 (+)	387	WP_064971057.1	HIT family protein	-
ACFKQE_RS03485 (ACFKQE_03485)	clpX	711685..712857 (+)	1173	WP_154468819.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
ACFKQE_RS03490 (ACFKQE_03490)	-	712944..714896 (+)	1953	WP_264314713.1	T9SS type A sorting domain-containing protein	-
ACFKQE_RS03495 (ACFKQE_03495)	-	714908..715159 (+)	252	WP_004916956.1	hypothetical protein	-
ACFKQE_RS03500 (ACFKQE_03500)	-	715221..716498 (+)	1278	WP_264314712.1	thioredoxin family protein	-

Sequence

Protein

• Length: 390 a.a.
• Molecular weight: 43921.50 Da
• Isoelectric Point: 5.9781

>NTDB_id=944467 ACFKQE_RS03485 WP_154468819.1 711685..712857(+) (clpX) [Riemerella anatipestifer strain PAT3]
MNNNQCSFCGRHRKEVQMLVSGQNGLICEHCIEQAHAFVKDNIQKEEFSPVNNLSELKKPREIKKTLDEYVIGQDQAKKQ
LSIAVYNHYKRLLHSSTKKDNDVEIEKSNIIMIGETGTGKTLLAKTIARELNVPFCIVDATILTEAGYVGEDVESILSRL
LMVADYDVEKAEKGIVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGSIVNVPPQGGRKHPDQKYIQVNTQNILF
IAGGAFDGIKEIIERRLNKQAIGFSKEKLDSEKDLAHILPQVNSTDLRKFGLIPELLGRFPVITYLDQLTKETMVRIMKE
PKNSIVNQFKALFKIDGIDLEFTDEALEKIVDETFEKGLGARGLRGTTEKVLEDYMFDIDIISKNKITIN

Nucleotide

• Length: 1173 bp

>NTDB_id=944467 ACFKQE_RS03485 WP_154468819.1 711685..712857(+) (clpX) [Riemerella anatipestifer strain PAT3]
ATGAATAATAACCAGTGTTCTTTTTGCGGAAGACATCGTAAAGAAGTTCAAATGCTAGTTTCGGGACAGAATGGACTCAT
CTGCGAACATTGTATAGAACAAGCTCACGCATTTGTTAAAGACAATATTCAGAAAGAAGAATTTTCTCCTGTAAACAACC
TCTCCGAACTAAAGAAACCTAGAGAAATTAAAAAAACTCTAGACGAATATGTCATCGGACAAGACCAAGCTAAAAAACAA
CTTTCCATCGCAGTCTATAACCATTATAAAAGACTTCTTCACTCTTCAACAAAAAAAGACAATGATGTTGAAATAGAAAA
ATCTAACATCATTATGATAGGTGAAACAGGCACAGGAAAAACCCTTTTAGCGAAAACCATTGCAAGAGAACTTAATGTCC
CTTTTTGTATTGTAGACGCTACTATACTTACCGAAGCTGGTTATGTAGGCGAAGATGTAGAGAGTATTTTATCTAGACTT
CTTATGGTCGCTGATTACGATGTAGAGAAAGCCGAAAAAGGCATTGTATTCATAGATGAAATAGATAAAATAGCGAGGAA
ATCAGACAATCCAAGCATCACAAGAGATGTATCAGGAGAAGGTGTACAGCAAGGATTATTAAAATTATTAGAAGGAAGCA
TCGTAAATGTACCGCCTCAAGGAGGAAGAAAACATCCTGACCAAAAATACATACAGGTAAACACTCAGAACATTTTATTT
ATTGCGGGAGGGGCTTTTGATGGTATAAAAGAAATTATAGAAAGAAGACTAAACAAGCAAGCCATAGGCTTTAGTAAAGA
AAAACTAGATTCCGAAAAAGATTTGGCACACATATTGCCACAAGTAAACTCAACGGATTTGAGAAAGTTCGGATTGATTC
CAGAACTTTTAGGTAGATTCCCTGTAATTACTTATTTAGACCAACTAACCAAAGAGACCATGGTAAGAATAATGAAAGAG
CCAAAAAACTCTATTGTTAATCAATTCAAAGCTCTTTTCAAAATAGACGGTATAGATTTAGAGTTCACAGACGAAGCCTT
AGAGAAAATTGTAGATGAAACTTTTGAAAAAGGATTAGGTGCAAGAGGACTTAGAGGCACTACAGAAAAGGTTTTAGAAG
ATTACATGTTTGATATAGATATAATATCCAAAAATAAAATTACAATAAATTAA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (5-40)

• AAA domain (Cdc48 subfamily) (AAA_2) (106-303)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (309-378)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	52.785	96.667	0.51
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	51.715	97.179	0.503