Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   V9W59_RS06925 Genome accession   NZ_CP146762
Coordinates   1403019..1403480 (-) Length   153 a.a.
NCBI ID   WP_008356877.1    Uniprot ID   -
Organism   Bacillus safensis strain JJ1041     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1398019..1408480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W59_RS06900 (V9W59_06900) - 1398621..1399505 (+) 885 WP_133743879.1 cation diffusion facilitator family transporter -
  V9W59_RS06905 (V9W59_06905) - 1399570..1399722 (-) 153 WP_162842519.1 hypothetical protein -
  V9W59_RS06910 (V9W59_06910) - 1400024..1400563 (+) 540 WP_024424707.1 RDD family protein -
  V9W59_RS06915 (V9W59_06915) - 1400689..1401999 (+) 1311 WP_024424708.1 MFS transporter -
  V9W59_RS06920 (V9W59_06920) - 1402073..1402981 (+) 909 WP_024424709.1 chemotaxis protein -
  V9W59_RS06925 (V9W59_06925) kre 1403019..1403480 (-) 462 WP_008356877.1 YkyB family protein Regulator
  V9W59_RS06930 (V9W59_06930) - 1404146..1405021 (+) 876 WP_241743573.1 replicative DNA helicase -
  V9W59_RS06935 (V9W59_06935) - 1405267..1405425 (+) 159 WP_176544433.1 hypothetical protein -
  V9W59_RS06940 (V9W59_06940) - 1405601..1406425 (-) 825 WP_098676841.1 hypothetical protein -
  V9W59_RS06945 (V9W59_06945) - 1406667..1406855 (+) 189 WP_241743572.1 XtrA/YqaO family protein -
  V9W59_RS06950 (V9W59_06950) - 1407210..1407434 (+) 225 WP_326355678.1 ArpU family phage packaging/lysis transcriptional regulator -
  V9W59_RS06955 (V9W59_06955) - 1407648..1408295 (+) 648 WP_098676843.1 hypothetical protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17711.30 Da        Isoelectric Point: 10.2452

>NTDB_id=944432 V9W59_RS06925 WP_008356877.1 1403019..1403480(-) (kre) [Bacillus safensis strain JJ1041]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=944432 V9W59_RS06925 WP_008356877.1 1403019..1403480(-) (kre) [Bacillus safensis strain JJ1041]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAACCCCAAGTTTCTTTATCTTTTGAAAAAACGCGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAGTATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACGAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAACCGAGCAAAGCAAATACTTCAAACGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTACACAAAGCCCGTCTTCAAACGTCTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

75.974

100

0.765