Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   ACFIOS_RS08045 Genome accession   NZ_CP170436
Coordinates   1680635..1681897 (-) Length   420 a.a.
NCBI ID   WP_410540770.1    Uniprot ID   -
Organism   Staphylococcus aureus strain t1510     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1675635..1686897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFIOS_RS08020 - 1675833..1676501 (-) 669 WP_000805953.1 uroporphyrinogen-III synthase -
  ACFIOS_RS08025 hemC 1676523..1677449 (-) 927 WP_001230218.1 hydroxymethylbilane synthase -
  ACFIOS_RS08030 ccsA 1677491..1678306 (-) 816 WP_001157329.1 cytochrome c biogenesis protein -
  ACFIOS_RS08035 hemA 1678328..1679674 (-) 1347 WP_000545465.1 glutamyl-tRNA reductase -
  ACFIOS_RS08040 yihA 1679891..1680481 (-) 591 WP_000867697.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  ACFIOS_RS08045 clpX 1680635..1681897 (-) 1263 WP_410540770.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ACFIOS_RS08050 tig 1682048..1683349 (-) 1302 WP_000127572.1 trigger factor -
  ACFIOS_RS08055 - 1683397..1683507 (-) 111 WP_001790560.1 hypothetical protein -
  ACFIOS_RS08060 - 1683512..1684441 (-) 930 WP_001280025.1 hypothetical protein -
  ACFIOS_RS08065 - 1684460..1685068 (-) 609 WP_000032657.1 NUDIX domain-containing protein -
  ACFIOS_RS08070 rplT 1685210..1685566 (-) 357 WP_001138360.1 50S ribosomal protein L20 -
  ACFIOS_RS08075 rpmI 1685613..1685813 (-) 201 WP_001125540.1 50S ribosomal protein L35 -
  ACFIOS_RS08080 infC 1685842..1686369 (-) 528 WP_001807711.1 translation initiation factor IF-3 -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46308.44 Da        Isoelectric Point: 4.2246

>NTDB_id=944432 ACFIOS_RS08045 WP_410540770.1 1680635..1681897(-) (clpX) [Staphylococcus aureus strain t1510]
MFKFNEDEENLKCSFCGKDQDQVKKLVAGSGVYICNECIELCSEIVEEELAQNTSEAITELPTPKEIMDHLNEYVIGQEK
AEKSLAVAVYNHYKRIQQLGPKEDDVELQKSNIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENIL
LRLIQAADFDIDKAEKGIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQIDTTN
ILFILGGAFDGIEEVIKRRLGEKVIGFSSNEVDKYDEQALLAQIRPEDLQAYGLIPEFIGRVPIVANLETLDVTALKNIL
TQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKAIERKTGARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTINEE
TEPELYDAEGNLINNSKTSA

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=944432 ACFIOS_RS08045 WP_410540770.1 1680635..1681897(-) (clpX) [Staphylococcus aureus strain t1510]
ATGTTTAAATTCAATGAAGATGAAGAAAATTTGAAATGCTCTTTCTGCGGAAAAGACCAAGATCAAGTAAAAAAACTTGT
AGCAGGAAGTGGTGTATATATTTGTAATGAGTGTATTGAATTATGCTCAGAAATCGTCGAAGAAGAATTAGCTCAAAACA
CTTCTGAAGCGATTACAGAATTACCTACTCCTAAAGAAATTATGGATCATTTAAACGAATATGTTATTGGTCAAGAAAAA
GCTGAAAAATCTTTAGCTGTGGCTGTTTATAACCACTATAAGCGTATTCAACAATTAGGACCAAAAGAAGATGATGTTGA
ATTACAAAAAAGTAACATTGCCTTAATTGGGCCAACAGGTAGTGGTAAAACATTATTAGCTCAAACATTAGCCAAGACGT
TGAATGTACCATTTGCAATTGCAGATGCGACAAGTTTAACTGAAGCTGGTTATGTAGGCGATGATGTTGAAAATATCTTG
TTGAGATTAATTCAAGCAGCTGACTTTGACATTGATAAAGCCGAAAAAGGTATTATTTATGTAGATGAAATTGATAAAAT
TGCACGTAAATCTGAAAACACATCTATAACACGTGACGTTTCAGGTGAAGGTGTTCAACAAGCATTGCTTAAAATCTTAG
AAGGTACAACTGCAAGTGTTCCACCACAAGGTGGACGCAAACATCCAAACCAAGAAATGATTCAAATTGATACAACAAAT
ATCTTATTTATTCTTGGTGGTGCCTTTGATGGTATTGAAGAAGTGATTAAGCGCCGCCTTGGTGAAAAAGTTATTGGTTT
CTCAAGCAATGAAGTTGATAAATATGATGAACAAGCATTATTAGCACAAATTCGCCCAGAAGATTTGCAAGCCTATGGTT
TGATTCCTGAATTTATCGGACGTGTGCCAATTGTAGCTAATTTAGAAACATTAGATGTAACTGCGTTGAAAAACATCTTA
ACTCAACCTAAAAATGCACTTGTGAAACAATATACTAAAATGCTGGAATTAGATGATGTGGATTTAGAGTTCACTGAAGA
AGCTTTATCAGCAATTAGTGAAAAAGCAATTGAAAGAAAAACAGGTGCGCGTGGTTTACGTTCAATCATAGAAGAATCGT
TAATCGATATTATGTTTGATGTGCCTTCTAACGAAAATGTAACGAAGGTAGTTATTACAGCACAAACAATTAATGAAGAA
ACTGAACCAGAACTATACGACGCAGAAGGTAATTTAATTAATAATAGTAAAACATCAGCTTAA

Domains

Predicted by InterProScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-48)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

66.667

95

0.633
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.203

94.048

0.529