Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   V9W61_RS11195 Genome accession   NZ_CP146761
Coordinates   2207620..2209353 (-) Length   577 a.a.
NCBI ID   WP_335350754.1    Uniprot ID   -
Organism   Bacillus altitudinis strain JJ1138     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2202620..2214353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W61_RS11180 (V9W61_11180) - 2203507..2204607 (-) 1101 WP_024718885.1 Rap family tetratricopeptide repeat protein -
  V9W61_RS11185 (V9W61_11185) spo0A 2205057..2205860 (-) 804 WP_008342226.1 sporulation transcription factor Spo0A Regulator
  V9W61_RS11190 (V9W61_11190) spoIVB 2206144..2207421 (-) 1278 WP_007501161.1 SpoIVB peptidase -
  V9W61_RS11195 (V9W61_11195) recN 2207620..2209353 (-) 1734 WP_335350754.1 DNA repair protein RecN Machinery gene
  V9W61_RS11200 (V9W61_11200) argR 2209388..2209837 (-) 450 WP_007501163.1 transcriptional regulator ArgR -
  V9W61_RS11205 (V9W61_11205) - 2210205..2211059 (-) 855 WP_335352139.1 TlyA family RNA methyltransferase -
  V9W61_RS11210 (V9W61_11210) dxs 2211056..2212957 (-) 1902 WP_007501165.1 1-deoxy-D-xylulose-5-phosphate synthase -
  V9W61_RS11215 (V9W61_11215) - 2213109..2213999 (-) 891 WP_159159765.1 polyprenyl synthetase family protein -
  V9W61_RS11220 (V9W61_11220) - 2213989..2214249 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64544.39 Da        Isoelectric Point: 4.7095

>NTDB_id=944381 V9W61_RS11195 WP_335350754.1 2207620..2209353(-) (recN) [Bacillus altitudinis strain JJ1138]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINQSGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGADEIAPALS
QYQEAYDQYMKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNFEKIFSSLQNAYNALRNE
QGGLDWVGMASSELEQVSEINDDLKTLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAISRDALLEALNVSELRKKWAKKLAKHIQAELKDLYMEKSSFDTAFTI
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDTG
VSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRAKAGRTMTNVKPLSDDEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=944381 V9W61_RS11195 WP_335350754.1 2207620..2209353(-) (recN) [Bacillus altitudinis strain JJ1138]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAGGAGTTAACGGTTTCGTTTGAAAAAGGACTGACAGTTCT
AACAGGGGAAACAGGTGCCGGAAAATCAATCATGATTGACGCTGTCTCACTTCTCGTAGGGGGAAGAGGATCATCCGAAT
TTGTCCGTTATGGCGAAAAAAAAGCAGAGCTGGAAGGCCTTTTTCTTGTACCAGCAGATCATCCTGTATTTGCCCTTTGC
GAGGAACAAGGAATTGATGCATCTGATGAAATGATGATTCTTCGCCGTGATATCAATCAAAGCGGGAAAAGCATTTGCCG
CATTAATGGGAAGCTTGTCACCATCTCGCTTTTAAGAGAAGTTGGCCGGCTTTTGCTTGATATACATGGACAGCACGATA
ATCAGCTGTTAATGGAGGATGAAAATCATTTGCATTTGCTTGATCAATTTGGAGCAGATGAAATTGCACCTGCTCTCTCG
CAGTATCAAGAAGCGTATGATCAATATATGAAGACGGCGCAAAAACTCAAACAGCTGTCTGAAAATGAACAAGAAATGGT
TCACCGGTTAGACTTATTGCAATTTCAGCTGGAAGAGATTGAAGCGGCACAATTAGAGCCTGGGGAAGATGAGAAGCTTC
AAGAGGAACGTCATCAAATCAGCAATTTTGAAAAAATCTTTTCCTCGCTTCAAAACGCATATAATGCTCTGCGTAATGAG
CAGGGAGGACTTGATTGGGTTGGGATGGCTTCAAGCGAGCTTGAGCAAGTTTCTGAGATCAACGACGATCTGAAAACACT
CTCTGAGCAAGTGTCAAACTCCTATTATTTATTGGAAGATTCTACTTTTCAAATGCGCAGCATGCTTGATCAATTAGAAT
TTGACCCAGCCCGTCTTGATTTTATTGAGTCTAGGCTAAATGAGATGAAGCAGCTGAAGCGAAAGTACGGCACAACCGTT
GAGGAAATTTTAGAATATGCGGCTAAGATTGAAGAGGAGATAGACCAAATCCAAAATCGAGACAGCCATTTGCAGACACT
TAAAAACAAACTTGATGCGATAAGCCGGGATGCATTGCTTGAAGCGCTTAACGTGTCAGAGCTCCGTAAAAAATGGGCGA
AAAAACTGGCGAAGCACATTCAAGCTGAATTGAAGGATTTATATATGGAGAAGTCTTCTTTTGATACCGCTTTTACGATT
CGATATGCACCTTTTGGCAGTACGGACTGCCCGCTTTTAGATGGAAAACCCGTACAGCTCGGGAAAAATGGCATAGATCA
AGCTCAATTTGTCATTTCTACAAATCCGGGTGAACCGATGAAATCTTTGTCAAAAGTAGCATCTGGAGGAGAAATTTCAC
GTGTCATGCTGGCAGTGAAAAGTATTTTCTCAGCGAAACAAGAAGTGACGTCCATTATATTTGATGAAGTGGATACGGGT
GTTAGCGGCAGAGTCGCACAAGCCATTGCTGAAAAAATTTATAAAGTAGCAGCAGGCTCACAAGTACTCTGTATTACCCA
TCTGCCGCAAGTTGCAGCAATGGCTGATACACATCTTTTTATTTCAAAACGCGCTAAAGCTGGTAGAACAATGACGAACG
TCAAACCACTTAGTGATGATGAAAAAGTGAGTGAAATTGGCCGAATGATTGCTGGTGTAGAAGTCACTGAGCTCACAAAA
CAGCATGCAAAAGAATTACTGCACCAAGCAAATGATGTCAAAACGACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.563

100

0.756