Detailed information NTG0944280

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: V9W63_RS02005
• Genome accession: NZ_CP146760
• Coordinates: 395620..396768 (+)
• Length: 382 a.a.
• NCBI ID: WP_007410270.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain JJ334
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 390620..401768

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V9W63_RS01985 (V9W63_01985)	-	391017..391700 (-)	684	WP_059366584.1	ABC transporter ATP-binding protein	-
V9W63_RS01990 (V9W63_01990)	-	391715..393151 (-)	1437	WP_076425710.1	ABC transporter permease	-
V9W63_RS01995 (V9W63_01995)	-	393364..394047 (+)	684	WP_007410267.1	response regulator transcription factor	-
V9W63_RS02000 (V9W63_02000)	-	394034..395467 (+)	1434	WP_165913860.1	HAMP domain-containing sensor histidine kinase	-
V9W63_RS02005 (V9W63_02005)	rapC	395620..396768 (+)	1149	WP_007410270.1	Rap family tetratricopeptide repeat protein	Regulator
V9W63_RS02010 (V9W63_02010)	phrC	396752..396871 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
V9W63_RS02015 (V9W63_02015)	-	397019..397114 (-)	96	WP_021495118.1	YjcZ family sporulation protein	-
V9W63_RS02020 (V9W63_02020)	-	397209..398573 (-)	1365	WP_095352403.1	aspartate kinase	-
V9W63_RS02025 (V9W63_02025)	ceuB	398987..399940 (+)	954	WP_059366593.1	ABC transporter permease	Machinery gene
V9W63_RS02030 (V9W63_02030)	-	399930..400877 (+)	948	WP_007410274.1	iron chelate uptake ABC transporter family permease subunit	-
V9W63_RS02035 (V9W63_02035)	-	400871..401629 (+)	759	WP_003156330.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45475.70 Da
• Isoelectric Point: 4.9916

>NTDB_id=944280 V9W63_RS02005 WP_007410270.1 395620..396768(+) (rapC) [Bacillus velezensis strain JJ334]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=944280 V9W63_RS02005 WP_007410270.1 395620..396768(+) (rapC) [Bacillus velezensis strain JJ334]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTATTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTATACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568