Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V8687_RS20060 Genome accession   NZ_CP146610
Coordinates   4562387..4563091 (-) Length   234 a.a.
NCBI ID   WP_006083192.1    Uniprot ID   A0A9X2WXK9
Organism   Shewanella baltica strain TMP1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4557387..4568091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8687_RS20045 (V8687_20035) - 4558203..4560212 (+) 2010 WP_338725889.1 fumarate reductase flavoprotein subunit -
  V8687_RS20050 (V8687_20040) - 4560209..4560934 (+) 726 WP_259560363.1 fumarate reductase iron-sulfur subunit -
  V8687_RS20055 (V8687_20045) - 4561165..4562232 (+) 1068 WP_338725890.1 porin -
  V8687_RS20060 (V8687_20050) ssb 4562387..4563091 (-) 705 WP_006083192.1 single-stranded DNA-binding protein Machinery gene
  V8687_RS20065 (V8687_20055) - 4563201..4564568 (-) 1368 WP_006083193.1 MFS transporter -
  V8687_RS20070 (V8687_20060) uvrA 4564984..4567866 (+) 2883 WP_012586712.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 25189.73 Da        Isoelectric Point: 5.2341

>NTDB_id=943367 V8687_RS20060 WP_006083192.1 4562387..4563091(-) (ssb) [Shewanella baltica strain TMP1]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVLFGKLAEITGEYLRKGSQVYLE
GKLQTRKWKDQSGQDRYSTEVVIDQSGSMQMLGSRGQGGQAQGAPMGGGMPQNAGYQSAPQQAAPAQNQYAPAPQAAPAY
QAPAQQQYAAPAPAQQQYGQQQAQPQQGGYAPKPQAAPAPAYQAPAAPAQRPAPQPQQNFTPDLDDGWDDDIPF

Nucleotide


Download         Length: 705 bp        

>NTDB_id=943367 V8687_RS20060 WP_006083192.1 4562387..4563091(-) (ssb) [Shewanella baltica strain TMP1]
ATGGCCAGTCGTGGTGTTAACAAGGTAATTTTGGTTGGCAATTTGGGACAAGATCCAGAAGTGCGTTATATGCCAAACGG
TAATGCAGTCGCTAACATCACAGTTGCGACCAGCGAATCGTGGAAAGACCAACAAGGTCAACAGCAAGAGCGTACTGAAT
GGCACCGTGTGGTTCTGTTCGGCAAATTAGCTGAAATTACAGGTGAATACCTGCGTAAAGGTTCACAGGTTTACCTTGAA
GGTAAACTGCAAACCCGTAAGTGGAAAGACCAAAGCGGTCAAGACCGTTACAGCACTGAAGTGGTTATCGACCAAAGCGG
TAGCATGCAAATGCTAGGTAGCCGTGGTCAAGGTGGCCAAGCACAAGGCGCGCCAATGGGCGGCGGCATGCCACAAAACG
CAGGTTACCAATCTGCACCACAACAAGCGGCACCAGCGCAAAATCAATATGCGCCAGCGCCACAAGCTGCACCTGCTTAC
CAAGCGCCAGCTCAGCAACAGTATGCTGCGCCAGCACCTGCTCAGCAGCAATATGGACAGCAACAAGCTCAACCACAGCA
AGGTGGTTATGCGCCTAAGCCACAAGCTGCTCCAGCGCCAGCTTATCAAGCGCCAGCCGCACCGGCACAACGTCCAGCAC
CACAACCACAGCAAAACTTCACTCCAGATTTGGATGATGGCTGGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

64.571

74.786

0.483
  ssb Glaesserella parasuis strain SC1401

45.022

98.718

0.444
  ssb Neisseria meningitidis MC58

41.558

98.718

0.41
  ssb Neisseria gonorrhoeae MS11

40.693

98.718

0.402